Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0602 ATGGATAAGGACAAATCCCCTGGTCATGGTGGAGGTTTTCCTCCTTCTTCTGGCCGTTTTTCGGGATTCTCAGCCTCCGCAGCCCCTTTTAATGTGAAATCAGAGTTACCATCTTCATCAGCATTGCTTCCTCCTCTGCCAGTTCCGGCTGCAACCTCGGACTCTGCTAGTTTTAGTCATGACATTAGCAGAATGCCTGATAACCCTCCGAGAAATCGAGGCCATAGGCGTGCTCATTCCGAGATTCTCACTTTGCCGGATGATATTAGCTTTGAAAATGACCTTGGCATAGTTGGAGGATGTGCTGATGGGCCCTCATTCTCCGATGACACTGAGGAAGACCTACTGTCCATGTACCTTGATATGGATAAATTCAATTTGCCGGCCGCTACAGGCGAGTTTGGAATTGGGGAGACTTCAATTGGTGGTGCAGCAACAGCAGCAGCAGTAGCATTGAGTTCAGCATTGGCATCAGGAGCCGSTGCCGCCTCTTCAGAAGACAACACTGCTGTTGGGACTAATGGAAGGCCTAGAGTGAGGCACCAGCATAGCCAGTCCATGGATGGATCCACAACCATCAAACCTGAGATTTTAGTCTCTGGCTTGGAAGAGGCCTCAGCAGTTGATTCCAAGAAGGCTATTTCGGCTGCCAAGCTTGCCGAGCTTGCCTTAATTGATCCAAAGCGTGCCAAGAGGATATGGGCAAATAGACAGTCTGCTGCTAGGTCAAAAGAAAGGAAGATGCGCTACATCGCCGAGCTTGAAAAGAGGGTACAGACATTGCAAACAGAAGCAACATCCTTGTCGGCACAATTAACTATCTTGCAGAGGGATACAGGTGGACTGAATGCCGAAAACAATGAGCTGAAAGTGCGGGTGCAATCGATGGAGCAACAAGTTCACTTGCAAGATGCGCTTAACGATGCATTAAAAGAGGAAATTCAGCATTTGAGAGTCCTTACCGGACAAGCTTTGCCAAATGGAGGAGCACCTATGAACTTTGCTTCATCAGTTGGAGGAGAACAACAATTCCAATCCAAAAATCAGTCCATGCACACCATTTTAGCTGCCCAGCAGTTACAACAACTCCAAATTCGCTCGCGGAAGCAACAGCATCAACAGCAGCTATTCCAGAACCATCAACCTCAGCATCTGCAGCAATTTCAGCAGCCACAACCACCACAGCAACAACAGGAACATTAG 1203 0.4813 MDKDKSPGHGGGFPPSSGRFSGFSASAAPFNVKSELPSSSALLPPLPVPAATSDSASFSHDISRMPDNPPRNRGHRRAHSEILTLPDDISFENDLGIVGGCADGPSFSDDTEEDLLSMYLDMDKFNLPAATGEFGIGETSIGGAATAAAVALSSALASGAXAASSEDNTAVGTNGRPRVRHQHSQSMDGSTTIKPEILVSGLEEASAVDSKKAISAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELEKRVQTLQTEATSLSAQLTILQRDTGGLNAENNELKVRVQSMEQQVHLQDALNDALKEEIQHLRVLTGQALPNGGAPMNFASSVGGEQQFQSKNQSMHTILAAQQLQQLQIRSRKQQHQQQLFQNHQPQHLQQFQQPQPPQQQQEH* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0602 400 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 226 289 IPR004827 GO:0003700|GO:0006355
Amo13g0602 400 MobiDBLite consensus disorder prediction 166 188 - -
Amo13g0602 400 Gene3D - 227 279 - -
Amo13g0602 400 Coils Coil 244 278 - -
Amo13g0602 400 CDD bZIP_plant_RF2 229 278 IPR044759 GO:0003700|GO:0006355
Amo13g0602 400 SUPERFAMILY Leucine zipper domain 228 278 IPR046347 GO:0003700|GO:0006355
Amo13g0602 400 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 385 - -
Amo13g0602 400 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 385 - -
Amo13g0602 400 SMART brlzneu 224 288 IPR004827 GO:0003700|GO:0006355
Amo13g0602 400 MobiDBLite consensus disorder prediction 1 78 - -
Amo13g0602 400 MobiDBLite consensus disorder prediction 19 38 - -
Amo13g0602 400 Coils Coil 293 313 - -
Amo13g0602 400 MobiDBLite consensus disorder prediction 367 400 - -
Amo13g0602 400 Pfam bZIP transcription factor 228 277 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0602 Amo-Chr13 7557758 7560813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0602 19 357 bZIP Transcription Factor Family AT1G06070 67.647 6.09e-152 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo13g0602 bZIP_1 3.3e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0602 - - adu:107476759 621.313