Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0595 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGTTCCAGCAACAGTGATCTGTTGTGCAGATGAAGCAGCTCTGTGTGCAAAATGTGATGTGGAGGTTCATAGTGCTAACAAGCTTGCAAGCAAACACCAGAGGCTTCTCCTTCAATGTCTCTCTAACAAGCTTCCAAGATGTGATATTTGCCAAGATAAGCCAGCTTTCATATTCTGTGTCGAAGACAGAGCACTCTTCTGTAAGGATTGCGACGAACCAATTCATTTAGCTGGCAGCCTTTCTGCGAACCACCAGCGGTTTCTCGCTACTGGAATCCGGGTGGCTTTGGGTTCTAATGACTGCTCCAAAAGTGATGAGAAAAGCCACTTGGAACCATCTAATCCAGCTGCGCAACAAGTTCCAAGGAAAGTTCCTTCTCAGCAATCGCCTAGCTTCACTCCCCCTAGCTTTTGGGCAGTTGATCAACTATTGGATTTACCAGAGTTTGGATCACCAGAGAAAAAACAAGCAGACGAATTTGGAGAGTTGGAATGGCTAGCAGATGTTGGTATCTTTGGTGAACAGTTTCCTCAGGAAACATTAGCTGCAGCTGAAGTTCCTCAGCTTCCTGTGTCGCACACTAGCACTCTTGCACCATACACTTTTAAAGCCACTAATAAATCTTACATGTCTAGCAAAAAGCCTAGGATCGAAGTCTTAGGTGAAATAGACGATGAGCATTTCACTGTGCCTGATCTAGGCTAA 735 0.4463 MKIQCDVCEKVPATVICCADEAALCAKCDVEVHSANKLASKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCKDCDEPIHLAGSLSANHQRFLATGIRVALGSNDCSKSDEKSHLEPSNPAAQQVPRKVPSQQSPSFTPPSFWAVDQLLDLPEFGSPEKKQADEFGELEWLADVGIFGEQFPQETLAAAEVPQLPVSHTSTLAPYTFKATNKSYMSSKKPRIEVLGEIDDEHFTVPDLG* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0595 244 CDD Bbox1_BBX-like 57 98 - -
Amo13g0595 244 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Amo13g0595 244 MobiDBLite consensus disorder prediction 121 141 - -
Amo13g0595 244 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 244 - -
Amo13g0595 244 SMART bboxneu5 4 47 IPR000315 GO:0008270
Amo13g0595 244 SMART bboxneu5 52 99 IPR000315 GO:0008270
Amo13g0595 244 MobiDBLite consensus disorder prediction 113 141 - -
Amo13g0595 244 CDD Bbox1_BBX-like 5 47 - -
Amo13g0595 244 Pfam B-box zinc finger 52 94 IPR000315 GO:0008270
Amo13g0595 244 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Amo13g0595 244 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 244 - -
Amo13g0595 244 Gene3D Classic Zinc Finger 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0595 Amo-Chr13 7503017 7505969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0595 1 164 Orphan Transcription Factor Family AT1G06040 66.071 5.36e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Amo13g0595 zf-B_box 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0595 - - gmx:100779183 381.719