Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0588 AGGAGCAAGGGAAGAGCCCCTTCCAAAGATCACACTTCTCAATCCGCCAACGATGATATTGAACTCTCCGAAGAGATCACTGCTCTATGTGCGATTTTCCAAGAAGATTGCAAGGTTCTTCCTGGCTCACCTCCTCAAATACTTATTAAGCTCAGGCCTTACTCTAAGGACATGGGTTATGAGGACTTGGATGTTTCTGCTCTTCTTCACGTCAGATGCTTACCTGGGTATCCCTTCAAGTGTCCCAAGCTGCAGATTACTCCTGAGAATGGCTTATTAGAGAGTGACACTGATAAACTATTGTCACTCCTCCATGATCAGGCTACTTTAAATGCTAGGGAGGGCCGAGTAATGATCTTTAATTTGGTTGAGGCTGCTCAAGAATTTCTGTCTGGAATTGAGCCAATTGCTAAACCAACTGAATCTAAGCCTTTGCACTCAACTAAGGAAAGCAATGAAGAATTGTTTCTCAAGGATATGGCACCGTCAAACAAAAATATATCTTTTGTTTATGGTTTCATAGACCTTTTCAGTGGTTATGRAGAGTCTTGGAATTGGGAAATTGGAATGGATGAAACTGCCGGAAAAAGTTCTTCTCTTCCTCCCTCTAAGTTAGACACCTCAAAATATGATTCTGAGGCCCGCGAAAAGAAATCTGACAGTAAGGAAAAACCATTAATAAAGCAAGAGCTCCCTGCTAAATTAGATACAGTTGGAGAAGTTAGTGMAGAYGGCAATAAGAATACATCCTYGACTAGTTCAAGTGGAAATCTGGTGGACGATCTTGTGGGGAATGACATTGAAGGTGAGAAAGAGGATTTTGTCTTTGCTGAGTATGCACCAGAAGATGACGAACAAATGTATGAAAGTGTGTCTTCAGAATCTTTTTCTTCTGCCACTTCTCAACATCAAACATCCCAAACAGTTGAAAAGGATCTTATAATGGTTCACCTGCTTCGTCTATGTGCTTCTAAAGGAACACTGGTTGACTCTTTGCCACAAGTAGCAGAAGAGCTATACAATTTTGGGATATTTTCTGATTGGGCTCGTGATATGGCATCTAAACCTCCCTCCCTTTTTAACAAAACATTTGATAATGTTTTTCAGAAACATGTGGCTTCAACCAGAATATCTCAGTTTTGGAAACCTTCTGATCTTGGTGGTTCAAATACGATTCCCCATAGTTCTCGATATCTGAATGATTTTGAGGAGCTACGGCCTCTTGGACATGGTGGTTTTGGCCATGTTGTGCTGTGCAAAAATAAGCTTGATGGAAGGCAGTATGCTGTAAAGAAGATTCGCCTTAAGGACAAAACCATGCCYGAAAGAATATTAAGAGAAGTAGCCACACTTTCTCGTTTGCAGCATCAACATGTCGTTAGGTATTATCAGGCATGGTTTGAAACCGGAATCGCAAACTCTGAAAACGATGCGGCTTGGAGTTCAAGGACTACACTGAGCTCTTCTTTCAGCTATACCTATAAAGCTGCAAGCTCCAATAATGCCCTTGGGCATGAAAATCAGCTTGAATCAACGTACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTTCACCAGGTGTTTGAATCATATAATCATTTCGACAAAGAGCTGGCATGGCATTTGTTTCGTCAAATAGTGGAAGGTTTGGCACATATACATGGACAAGGAATAATTCATCGGGATTTGACACCAAATAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTGGACAAGCTTGATCATGATCTTAGCCTTCCAGTTGATCCACCTGGAGTTTCTACAGATGGCACTGGACAAGTGGGGACTTATTTCTATACGGCTCCTGAAATTGAACAAGGATGGCCTAAGATTGATGAGAAGGCGGATATGTACAGCYTAGGTGTTGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGCCATGGAGAGACATATTGTGTTGTCTGATCTGAAACAGAAGGGAGAACTTCCTCCGGCATGGGTTGCTCAGTTTCCAGAACAGGAATCCATAGTACGAAAGTTGATGTCTCCAGGTCCTTCTGATCGGCCTTCAGCCACAGAGCTTCTACATAATGCCTTTCCCCCSAGAATGGAATMTGAATTGTTGGATGATATCCTCCGAACAATGAAGAAATCAGAGGATACAAGCATATATGACAAAGTTGTAAATGCCATCTTTGACCAAGAGATGTTAACTTCAAAACATATTCATCAAGCTGGAAGCTTGGGGACAGTTGGAGATAGTTCTTCATCTATTCAGTACACAGATCTTGAAACTGAGGTTCGAGATTATGTTGTAGATGTGAGCAGGGAAATTTTCAGACAGCATTGTGCAAAGCATCTAGAAGTATTAACAATGCGATTGTTGGATGATTGTCCACAGTTTAACAGAAATGCAGTTAAACTTCTGACCCATGGAGGAGACATGCTCGAACTTTGCCATGAGCTGCGCTTGCCTTTTGTGAATTGGATCATATCAAATCAGAAATCTTCATTCAAAAGATAYGAGATATCAAGTGTATACAGAAGAGCAGTTGGACATTCGTCACCAAATCGCTACCTTCAGGGAGATTTTGACATTATTGGTGGTACCTCAGCATTGACAGAGGCAGAGGTCATAAAGGTGACAAGGGACATAGTCACTTGCTTTTTCCATGCAGATTCATGTGACATTCATCTAAACCATGGTGAGTTACTGGATGCAATTTGGTCGTGGGTTGGAGTCAAAGTAGAACACAGGCTTAAAGTTGCAGAGATTCTTTCCATGATGGGTTCTTTGCGYCCACAATCTTCAAAAAGGAAATCAAAATGGGGAGTSATAAGGCGGCAGCTTTTGCAGGAACTAAAATTAGCAGAAGCTACTGTAAACAGACTGCAGACAGTTGGTTTAAGGTTCTGTGATTCTGCAAATCAGGCACTTCCTAGATTAAGAGGAGCTCTTCGATCTGATAAACGCACATGCAAGGCACTTGATGAATTGTCTGAACTCTTCAGTCTCTTGAGAATTTGGAAGATTGACCAAAACGTCTATATTGATGCATTGATGCCACCAACTGAAAGTTATCATAGAGATTTATTTTTTCAGGTGTACTTAAGGAAGGAGAACAATCCTGGATCMCTCTCTGATGGTGCCTTGCTAGCTGTTGGTGGTCGTTATGACTATTTGCTTCAKCAGTTATGCAGTCACAACTATAAAGGAAATCCCCCCAGTGGTGTAGGGAGTAGCCTTGCATTAGAGACAATAATTCAGAATTGTCCTGTGGATTTTAAGCCCCTTAGAAATGAAGCCAGCACCAGTGTTCTTGTCTGTTCAAGAGGAGGAGGTGGTCTTTTGATGGAGCGGATGGAACTAGTTGCTGAATTATGGGAAGAGAATTTTAAGGCTGGATTTGTTCCCATCCCCGATCCAAGTCTTACAGAGCAGTATGAGTATGCTAATGAGCATGATATCAAATGTCTCGTCATCATAACGGATGCAGGTGTCTCACAGACAGGTTCTGTTAAGGTGCTACTTGTTAGTTCAGCTGTCGCTAGKGTTCATGAGGAACAATCTTGGGATAAGRAAAGCAATCTTGTCCYAAGTTTATTGCTCATGAACYTGAGAATCTTACTGRAATGTGATTATACGATACTGTTATTAAGGGATTTCAATTGCCTCCAGGTTCGACACCTTGAATATAAGAGGGAGAAAAATGTTGAGAGAGAAAATCTAGTCAAGTTTCTGTCAGATGCTATGGCAACACAATTCAGAAACCCTTCCATTTGGTTTTAA 3813 0.411 RSKGRAPSKDHTSQSANDDIELSEEITALCAIFQEDCKVLPGSPPQILIKLRPYSKDMGYEDLDVSALLHVRCLPGYPFKCPKLQITPENGLLESDTDKLLSLLHDQATLNAREGRVMIFNLVEAAQEFLSGIEPIAKPTESKPLHSTKESNEELFLKDMAPSNKNISFVYGFIDLFSGYXESWNWEIGMDETAGKSSSLPPSKLDTSKYDSEAREKKSDSKEKPLIKQELPAKLDTVGEVSXDGNKNTSXTSSSGNLVDDLVGNDIEGEKEDFVFAEYAPEDDEQMYESVSSESFSSATSQHQTSQTVEKDLIMVHLLRLCASKGTLVDSLPQVAEELYNFGIFSDWARDMASKPPSLFNKTFDNVFQKHVASTRISQFWKPSDLGGSNTIPHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKTMPERILREVATLSRLQHQHVVRYYQAWFETGIANSENDAAWSSRTTLSSSFSYTYKAASSNNALGHENQLESTYLYIQMEYCPRTLHQVFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLDKLDHDLSLPVDPPGVSTDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHIVLSDLKQKGELPPAWVAQFPEQESIVRKLMSPGPSDRPSATELLHNAFPPRMEXELLDDILRTMKKSEDTSIYDKVVNAIFDQEMLTSKHIHQAGSLGTVGDSSSSIQYTDLETEVRDYVVDVSREIFRQHCAKHLEVLTMRLLDDCPQFNRNAVKLLTHGGDMLELCHELRLPFVNWIISNQKSSFKRYEISSVYRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDIVTCFFHADSCDIHLNHGELLDAIWSWVGVKVEHRLKVAEILSMMGSLRPQSSKRKSKWGVIRRQLLQELKLAEATVNRLQTVGLRFCDSANQALPRLRGALRSDKRTCKALDELSELFSLLRIWKIDQNVYIDALMPPTESYHRDLFFQVYLRKENNPGSLSDGALLAVGGRYDYLLXQLCSHNYKGNPPSGVGSSLALETIIQNCPVDFKPLRNEASTSVLVCSRGGGGLLMERMELVAELWEENFKAGFVPIPDPSLTEQYEYANEHDIKCLVIITDAGVSQTGSVKVLLVSSAVAXVHEEQSWDKXSNLVXSLLLMNLRILLXCDYTILLLRDFNCLQVRHLEYKREKNVERENLVKFLSDAMATQFRNPSIWF* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0588 1270 CDD STKc_EIF2AK4_GCN2_rpt2 395 704 - -
Amo13g0588 1270 MobiDBLite consensus disorder prediction 208 230 - -
Amo13g0588 1270 ProSitePatterns Tyrosine protein kinases specific active-site signature. 559 571 IPR008266 GO:0004672|GO:0006468
Amo13g0588 1270 Pfam Protein kinase domain 402 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0588 1270 SUPERFAMILY Class II aaRS and biotin synthetases 767 1097 IPR045864 -
Amo13g0588 1270 Gene3D - 1109 1260 IPR036621 -
Amo13g0588 1270 SUPERFAMILY UBC-like 22 130 IPR016135 -
Amo13g0588 1270 MobiDBLite consensus disorder prediction 242 260 - -
Amo13g0588 1270 Gene3D Phosphorylase Kinase; domain 1 390 520 - -
Amo13g0588 1270 PANTHER EIF-2-ALPHA KINASE GCN2 7 1183 - -
Amo13g0588 1270 PANTHER EIF-2-ALPHA KINASE GCN2 1231 1269 - -
Amo13g0588 1270 Gene3D Bira Bifunctional Protein; Domain 2 766 1101 IPR045864 -
Amo13g0588 1270 SMART RWD2001b 24 133 IPR006575 GO:0005515
Amo13g0588 1270 PANTHER HISTIDYL-TRNA SYNTHETASE 7 1183 - -
Amo13g0588 1270 Coils Coil 955 975 - -
Amo13g0588 1270 SUPERFAMILY Protein kinase-like (PK-like) 398 717 IPR011009 -
Amo13g0588 1270 Pfam RWD domain 22 130 IPR006575 GO:0005515
Amo13g0588 1270 Pfam Histidyl-tRNA synthetase 854 1095 IPR041715 -
Amo13g0588 1270 Gene3D Ubiquitin Conjugating Enzyme 11 139 IPR016135 -
Amo13g0588 1270 ProSiteProfiles RWD domain profile. 24 133 IPR006575 GO:0005515
Amo13g0588 1270 ProSiteProfiles Protein kinase domain profile. 402 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0588 1270 MobiDBLite consensus disorder prediction 192 263 - -
Amo13g0588 1270 ProSitePatterns Protein kinases ATP-binding region signature. 408 432 IPR017441 GO:0005524
Amo13g0588 1270 PANTHER HISTIDYL-TRNA SYNTHETASE 1231 1269 - -
Amo13g0588 1270 Gene3D Transferase(Phosphotransferase) domain 1 523 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0588 Amo-Chr13 7441374 7454662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0588 402 707 MAP Kinase Kinase Kinase AT1G63700 24.765 1.89e-21 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Amo13g0588 Pkinase 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0588 K16196 - gmx:100797996 1923.29