Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0584 ATGTATCCGAAACAGTCTGGCCAAGATGGCTCTGTTTCTGGTCCTGTGCGAACTAGTGATAGGATCAGGACAAGACCAAACATTTATGGCCGACCATTCATGTATTACAACACAAATCTTAGGCGGCGGAAGAAAAGCAAGAATAAGTCTAGGACAGCAGCTTCGATTGCCAAGATGCTGCGTCCAGGGAGCCGGAAGGCACAGGATTCAAATGCCAATTCTGGCTCTAGTAACCTTCGACGTTCAACTAGAAAGAGAAGGCTTAATGTAAATCTCGAAGGCTTTGCAACAGACAGCTCTGGAGCTGAGGATGAAGACTTAATGAGGCCTACGTATCGACCACCATTGAGAAATCGGATCAACAATAGCATCAACCAGGAAGAGTTGATGTCTAAGCACAAAAGAGCAGTGTCTACTAAATCAGCACCTAGACGTGAAGGTCTACGGCCTCGTCGTTCTAAGGCTGTGGCAAGAGAACAAGTAATTTCAGAATCAGATGATGGGCAAGACTTTTCAGAAGGCAAGGCAGAACAGGGTGAAACAGAAAATGGAAATGGTGAGGAAAATGARGCAGATGATGGTCAGAATGATATTGAAGGAGATGCTGAGGTGGAAGACGAAGGTGAGGATGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAGGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTAGAAATCGTTCTGATGTCCGTAGGTTTTCTATGGAAGAGGGGAAGACCCAACCAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGAAATAAGGTTAGCAGGGATGTTAGGAAGGGTGGATCACGAGTTCATAAACGGCATCGCCTAGCAAGGGCTGAAGACTCTGATGACTCCCTTCTTGTGGATGAGCTGGACCAAGGGCCTGCCATTCCATGGGGTCGAGGTGGCAACAGATCTGGGCCCCCCTGGCTCTTTGGGGGCTTAGATACGCATGGAACAACAGCATGGGGATTAAACCTTGCTGCATCGGGTTGGGCCCATCAGAGTGATGCTTTGGCTACCTTGACAACTGGGATTCAAACTGCTGGACCAAGCTCTAAGGGAGGGGCAGATATCCAGCCCTTACAGGTMGATGATACTGTTAGTTTTGAGGATATAGGTGGGCTCTCTGAATACATTGATMCTCTTAAAGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTCTTTGCTAGTTACCATATTACTCCTCCTAGAGGGGTGTTGCTATGTGGTCCCCCGGGAACTGGGAAAACATTAATTGCAAGAGCATTGGCTTGTGCTGCTTCAAAAGCCGGCCAGAAYGTTAGCTTTTACATGCGCAAAGGAGCGGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAGAGACAATTGAAGCTACTCTTTGAAGAAGCACAAAGGAATCAACCTTCTATRATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTTGTTTTAATTGGAGCTACCAATAGGATTGACGCTATTGATGGAGCTTTACGGCGCCCTGGTAGATTTGATCGTGAATTTAATTTTCCTTTGCCTGGTTGTGAGGCACGTGCCGAAATATTAGATATTCATACTCGCAAGTGGAAGCATCCACCTTCAAAGGATCTGAAAAGGGAACTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGATCTAAAGGCTCTATGTACTGAAGCTGCCATTCGTGCTTTCCGTGAAAAATACCCACAGGTTTATACAAGTGATGACAAATTTCTTATAGARGTGGATTCGGTCAAGGTAGAAAAGTATCATTTTGTTGATGCAATGTCTACAATTACCCCTGCTGCTCACAGGGGAGCTATAGTGCACTCTAGGCCATTATCTCTTGTAGTTCAACCGTGTCTTCAGAGACATCTAGAAAGGGTCATGAGTATTATATCTGATATTTTCCCCCCAGTTTCTGTTGCATCAGAACTGACCAAATTTTCAATGCTTTCCTATGGGTCTGCAATTCCACTTGTTTATCGACCTAGACTCCTACTTTGTGGTGGTGAAGGTACTGGGCTGGATCATCTTGGGCCTGCGGTTTTACATGAACTGGAAAAATTTCCTGTACATTCATTAGGACTTCCATCTCTGCTGTCAGATCCTAGTGCTAAGACACCAGAGGAGGCATTGGTACACATATTTGGCGAAGCTAGAAGAACCACACCATCAATTCTCTATTTACCACAATTTGATGTTTGGTGGGAAACTGCTCATGAACAACTCAGAGCTGTTCTCCTGACTTTGCTAGATGAATTGCCATCTGACATGCCTATCCTTCTACTGGGAACATCCTCAGTTGTGCTTGCTGAAGTTGAAGATGTACCACATTCAGTTTTCCCTCATCGCTCAGTCTATGAAGTGAACATGCCATCTACTGAGGATAGGACCCTGTTTTTCAATCGTTTAATTGAAGCTGCTATGTCAGTCTTGTTAGAAAGAATGAGTGAGAAATCCGATAATAAAGGACACCTTCCTGAACTTCCCAAGGCACCAAAGTTGGCCACTGGTCCTAAGGTATCTGAGCTAAAAGCAAAGGTAGAAGCTGAGCAACATGCACTTCGCAGATTGCGAATGTGCCTAAGAGATGTTTGCAATCGGATATTGTATGACAAACGATTTAATGCCTTCCATTATCCAGTCTCTGATGAAGACGCACCTAATTATCGGTCAATCATACAGAACCCAATGGATATGGCTACTGTGCTGCATCATGTTGATAATGGTCATTATATCACATGTGCAGCATTCCTGCAGGATATTGATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGAGGACTACAATGGTGCTAGAATTGTCAGCAGAGCCTGTGAGCTGCGTGATGTGGTGCAAGGGATGATCTCACAGATGGATCCAGCACTGGTTGCATACTGTGACAAGATTGCTAGCCAAGGAGGTCCAGCCCAGTTGCCTGATGAATTAGGGGTATCCACTTTCCCTGCAACTCCTGTTGTTCAGCTGAGTGCTGCTACTAGAACAAGTGCTCGACTTCGTCATGTCCAACCGGAGGTTAATGTTGATCAGAGTTATGAAGCACTGAAGCGGACAAAGAAGACAGTTGATATTGCACATCCAGTGGCGGAGGAGAAGTCTCCAGAAGATCCTTTACCGTCTAAGCCTCCCCCGGAGCATCAGACAAATGACATGGATTCTGAAATGGTAGAACCTGTGACAATCGATGGAAATTCACATGGAACTTCTACGAGTAGCCAAGATGATGGTGGCAGAAGTCTTGAGGATGTCACAATGGTGGATGGTGAATTTTCAGGAAAAGTGGAGTCTTTAAAGGAACAATTTGTTAAGCGCAGTGAAAATTGCAGCGTTCCACAACTTGAAAGGCTTTACACAAGGATTATGAAGGGTGTGTTTGAAAGCAGAGATAAAGGTGATGATGTTAAGGCTTCGGTTTTGAAGTTTTTGTCGAAATTTGTAGAGGATGATGCAAATTTCTGA 3639 0.4446 MYPKQSGQDGSVSGPVRTSDRIRTRPNIYGRPFMYYNTNLRRRKKSKNKSRTAASIAKMLRPGSRKAQDSNANSGSSNLRRSTRKRRLNVNLEGFATDSSGAEDEDLMRPTYRPPLRNRINNSINQEELMSKHKRAVSTKSAPRREGLRPRRSKAVAREQVISESDDGQDFSEGKAEQGETENGNGEENEADDGQNDIEGDAEVEDEGEDDEDGDDEEGEEEEEEEEEEEEEEEEEQDGRRRYDLRNRSDVRRFSMEEGKTQPRSPRRVLHQGMGNKVSRDVRKGGSRVHKRHRLARAEDSDDSLLVDELDQGPAIPWGRGGNRSGPPWLFGGLDTHGTTAWGLNLAASGWAHQSDALATLTTGIQTAGPSSKGGADIQPLQVDDTVSFEDIGGLSEYIDXLKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQNVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSXIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPSKDLKRELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIEVDSVKVEKYHFVDAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLERVMSIISDIFPPVSVASELTKFSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLDELPSDMPILLLGTSSVVLAEVEDVPHSVFPHRSVYEVNMPSTEDRTLFFNRLIEAAMSVLLERMSEKSDNKGHLPELPKAPKLATGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPMDMATVLHHVDNGHYITCAAFLQDIDLIVSNAKAYNGEDYNGARIVSRACELRDVVQGMISQMDPALVAYCDKIASQGGPAQLPDELGVSTFPATPVVQLSAATRTSARLRHVQPEVNVDQSYEALKRTKKTVDIAHPVAEEKSPEDPLPSKPPPEHQTNDMDSEMVEPVTIDGNSHGTSTSSQDDGGRSLEDVTMVDGEFSGKVESLKEQFVKRSENCSVPQLERLYTRIMKGVFESRDKGDDVKASVLKFLSKFVEDDANF* 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0584 1212 MobiDBLite consensus disorder prediction 1122 1138 - -
Amo13g0584 1212 ProSiteProfiles Bromodomain profile. 930 992 IPR001487 GO:0005515
Amo13g0584 1212 MobiDBLite consensus disorder prediction 183 237 - -
Amo13g0584 1212 PANTHER AAA DOMAIN-CONTAINING 1 1207 IPR045199 -
Amo13g0584 1212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 651 IPR027417 -
Amo13g0584 1212 PRINTS Bromodomain signature 939 955 IPR001487 GO:0005515
Amo13g0584 1212 PRINTS Bromodomain signature 973 992 IPR001487 GO:0005515
Amo13g0584 1212 PRINTS Bromodomain signature 955 973 IPR001487 GO:0005515
Amo13g0584 1212 Pfam Bromodomain 920 988 IPR001487 GO:0005515
Amo13g0584 1212 SUPERFAMILY Bromodomain 905 1019 IPR036427 GO:0005515
Amo13g0584 1212 Gene3D - 385 655 IPR027417 -
Amo13g0584 1212 SMART AAA_5 423 564 IPR003593 -
Amo13g0584 1212 MobiDBLite consensus disorder prediction 1079 1140 - -
Amo13g0584 1212 ProSitePatterns AAA-protein family signature. 532 550 IPR003960 GO:0005524|GO:0016887
Amo13g0584 1212 CDD AAA 423 562 - -
Amo13g0584 1212 CDD AAA 707 845 - -
Amo13g0584 1212 Gene3D - 563 648 - -
Amo13g0584 1212 Gene3D - 696 856 IPR027417 -
Amo13g0584 1212 MobiDBLite consensus disorder prediction 1 20 - -
Amo13g0584 1212 Pfam AAA+ lid domain 590 626 IPR041569 -
Amo13g0584 1212 CDD Bromo_AAA 907 1017 - -
Amo13g0584 1212 MobiDBLite consensus disorder prediction 128 182 - -
Amo13g0584 1212 Gene3D - 899 1027 IPR036427 GO:0005515
Amo13g0584 1212 SMART bromo_6 907 1014 IPR001487 GO:0005515
Amo13g0584 1212 PANTHER BNAC08G44480D PROTEIN 1 1207 - -
Amo13g0584 1212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 926 IPR027417 -
Amo13g0584 1212 MobiDBLite consensus disorder prediction 1 245 - -
Amo13g0584 1212 MobiDBLite consensus disorder prediction 1079 1099 - -
Amo13g0584 1212 Coils Coil 214 242 - -
Amo13g0584 1212 Pfam ATPase family associated with various cellular activities (AAA) 427 562 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0584 Amo-Chr13 7385624 7398089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0584 373 627 Calmodulin-binding Proteins AT3G56690 36.680 4.71e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0584 K22531 - gmx:100787765 1920.59