Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0580 ATGGGAAGCTGCATTTCAACGCATGGGAATAATAATGTTCCACGTAACAAAAGATCCAAAGACCAAAAGGCTTCAAGTCCAAAGAGCCACGTACATAACCACCATGGAAACGAGTACTATGAGCCTTCAACACCGTCGCCCGTGCCGCGAAAATCCCCGGTAAACGTTCGCGCCATCAATGTGGTGACAAACCCTACTTCGGGGAACATTTTTGACCGGTACCAGTTCGGAAAAGAGCTCGGAAGGGGCGAGTTCGGGGTGACTCATCGGTGCGTGGATCTGAAAACCGGCGAGGCGTTCGCTTGCAAGAAGATCGCAAAGTCGAAGCTGAGAACGGAGATCGATGTGCAAGATGTGAGGAGGGAGGTGCAGATCATGAGGCACTTGCCGAAGCACCCTAACATTGTGTCGTTCAGAGAGGCTTATGAAGATAAAGATGCCGTGTACCTTGTCATGGAGTTGTGCCAAGGCGGCGAGCTTTTCGATCGTATCGTCGCCAAAGGCCATTACACCGAGCGCGCTGCTGCTAATGTTACCAAGACCATACTTGAAGTCTGCAAGGTGTGCCATGAACATGGCGTAATCCACAGGGACTTGAAACCTGAAAATTTCTTGTTTGCAGATGCAAGTGAGAGCTCCCAATTGAAGGCTATTGATTTTGGCCTTTCCACATTTTATACACCTGGCCAAAGATTTAATGAAATCGTTGGAAGTCCCTATTACATGGCTCCAGAGGTTCTAAGACGTAACTATGGAAATGAAGTTGATATATGGAGCACTGGCGTCATTCTCTATATTTTGCTTTGTGGAGTTCCTCCCTTTTGGGCAGAAACTGAGGAAGGAATTGCACAAGCAATCATCAGGGGTCATTTGGACTTCACAAGAGATCCTTGGCCTAAAGTTTCAGATGAAGCAAAACACCTTGTTAAGCGTATGCTTGATCCAAATCCACAAACCAGGATAACAGTTCAAGAAGTCCTTGACCATTCTTGGATACTACATAGGGAGCATGGTAGAAATGTTTCCCTTGGAGACCAAGTGAGAAATAGGATCAAGCAATTCTCCTTAATGAATAGATTCAAGAAGAAGGTTCTTAGAGTGGTGGCTGATAACCTTCCTGATGAGCAACTTGATAGCATGACCAAAATGTTCCATATGATGGATAAGGACAAGAATGGAGACTTGTCGTTTGAGGAGCTCAAAGACGGCCTTGCAATGTTTGGACACACAATTCCTGATCTTGATGTCAAGATGCTGATGGATGCTGCAGATGTTGATGGAAATGGCACCTTGAACCGTGAGGAATTTATCACAATGAGTGTTTTCCTAAGGAGGATTGGAAGTGAAGAGACTCTGACAGATGCATTCCGTGACTTTGACAAGAATCAAACCGGATTCATCGAGTTTGACGAATTGAAAGAGGCTTTATCAGCTGATGATGAACACACTGATGAGCAGGTGATCACAGACATCCTCAATGATGTTGACTTAGACAAGGATGGCCGAATCAGTTTCGATGAGTTCAAGACAATGATGAAGTCAGGAGCAGATTGGAAGATGTCGTCTCGCCAGTATTCAAGAGCAATGCTAAACGCATTGAGTTTCAGGCTCTTCAAAGACAAATCTGTGAAGGTAACTAATTAA 1644 0.4507 MGSCISTHGNNNVPRNKRSKDQKASSPKSHVHNHHGNEYYEPSTPSPVPRKSPVNVRAINVVTNPTSGNIFDRYQFGKELGRGEFGVTHRCVDLKTGEAFACKKIAKSKLRTEIDVQDVRREVQIMRHLPKHPNIVSFREAYEDKDAVYLVMELCQGGELFDRIVAKGHYTERAAANVTKTILEVCKVCHEHGVIHRDLKPENFLFADASESSQLKAIDFGLSTFYTPGQRFNEIVGSPYYMAPEVLRRNYGNEVDIWSTGVILYILLCGVPPFWAETEEGIAQAIIRGHLDFTRDPWPKVSDEAKHLVKRMLDPNPQTRITVQEVLDHSWILHREHGRNVSLGDQVRNRIKQFSLMNRFKKKVLRVVADNLPDEQLDSMTKMFHMMDKDKNGDLSFEELKDGLAMFGHTIPDLDVKMLMDAADVDGNGTLNREEFITMSVFLRRIGSEETLTDAFRDFDKNQTGFIEFDELKEALSADDEHTDEQVITDILNDVDLDKDGRISFDEFKTMMKSGADWKMSSRQYSRAMLNALSFRLFKDKSVKVTN* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0580 547 Pfam EF-hand domain pair 392 440 IPR002048 GO:0005509
Amo13g0580 547 MobiDBLite consensus disorder prediction 1 52 - -
Amo13g0580 547 PANTHER SERINE/THREONINE-PROTEIN KINASE 53 528 - -
Amo13g0580 547 MobiDBLite consensus disorder prediction 14 37 - -
Amo13g0580 547 Gene3D - 341 515 - -
Amo13g0580 547 Pfam EF-hand domain pair 450 513 IPR002048 GO:0005509
Amo13g0580 547 CDD STKc_CAMK 73 331 - -
Amo13g0580 547 ProSitePatterns EF-hand calcium-binding domain. 460 472 IPR018247 -
Amo13g0580 547 Gene3D Transferase(Phosphotransferase) domain 1 160 340 - -
Amo13g0580 547 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 53 528 - -
Amo13g0580 547 ProSiteProfiles Protein kinase domain profile. 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0580 547 SUPERFAMILY Protein kinase-like (PK-like) 70 333 IPR011009 -
Amo13g0580 547 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Amo13g0580 547 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Amo13g0580 547 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
Amo13g0580 547 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Amo13g0580 547 SMART efh_1 415 443 IPR002048 GO:0005509
Amo13g0580 547 SMART efh_1 487 515 IPR002048 GO:0005509
Amo13g0580 547 SMART efh_1 379 407 IPR002048 GO:0005509
Amo13g0580 547 SMART efh_1 451 479 IPR002048 GO:0005509
Amo13g0580 547 ProSiteProfiles EF-hand calcium-binding domain profile. 411 446 IPR002048 GO:0005509
Amo13g0580 547 ProSiteProfiles EF-hand calcium-binding domain profile. 483 518 IPR002048 GO:0005509
Amo13g0580 547 Gene3D Phosphorylase Kinase; domain 1 76 159 - -
Amo13g0580 547 CDD EFh 452 513 IPR002048 GO:0005509
Amo13g0580 547 SUPERFAMILY EF-hand 360 518 IPR011992 -
Amo13g0580 547 Pfam Protein kinase domain 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0580 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Amo13g0580 547 SMART serkin_6 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0580 547 ProSitePatterns EF-hand calcium-binding domain. 424 436 IPR018247 -
Amo13g0580 547 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0580 Amo-Chr13 7365902 7369911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0580 1 540 EF-hand Containing Proteins AT2G31500 64.364 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Amo13g0580 Pkinase 1.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0580 K13412 - gmx:100818929 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0580 13 7365902 7369911 Amo13g0580 13 7365902 7369911 ECH