Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0579 ATGGACTCCGAGGAGGATATGCATGACGCCAATGACCTTGAATCCCTTGACGACGATTACTACAGTGGCGGCACGGAGGATGCTGCCATGAATTACTACAGCGACTACGATGACGATGCCGATGATTACTTCGACGAAGCTGATGATTCCGAAAGGCTCGAGTCTCGCCGCCCTGAGCAAAATTTTACCATCTTGAAGGAATCAGATATCCAGCAAAGACAGGAGGAGGACATCACTAGGGTAGCTACAGTTCTTTCTATATCAAGAGTTGATGCCAGCATATTACTTCGCCATTACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGAAGAAGATCGAGTCCGCAAAGCAGTTGGCTTGTTGGATAAGCCAATCATTGAGCATGCTGATGCTAGAGAGCTTACTTGCGGAATCTGTTTCGAAAATCATCCACGTGCTAAGATAGAGATGGCTTCTTGTGGTCATCCTTTCTGTCTCTCATGCTGGGAGGGATATATCAGCACATCCATCAGTGATGGCCCTGGATGTTTGATGCTGAGATGTCCTGATCCCGCATGTGGTGCTGCTGTTGGGCAAGATATGATTAATCGAGTAGCATCTGATGAAGATAAACAGAAGTATTCTCGCTACCTTCTTAGGTCGTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCGGGTAGCGGAAATTATGATGTCTCTTGCCTCTGTTCATATTGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTCTCAAAGTGGATTTTGAAGAACAGTGCAGAATCTGAAAACATGAACTGGATACTTGCCAACTCAAAGCCGTGCCCCAAATGCAAACGACCAATTGAGAAAAATCAAGGGTGCATGCACATGACATGCACACCACCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACCGGTGGTTTTTATGCTTGCAATCGATATGAAGCAGCTAAACAGGAAGGAGTGTATGATGATGCTGAAAGAAGAAGAGAGATGGCAAAGAATTCATTGGAGAGATACACTCATTATTATGAGCGATGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAGAGGCTCAGTGACATTCAATGCCAGCCTGAATCACAGCTAAAGTTCATAACAGAGGCCTGGCTACAGATAGTTGAGTGTAGGCGAGTGCTGAAATGGACATATGCGTATGGGTTCTATTTACCAGAGCACGAGCATGCCAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTCGAGAGACTTCATCAATGTGCCGAAAAGGAACTACAACCGTTCCTCAATGCCGATGGGCCATCTAAAGAATTCAATGACTTTCGTACAAAACTAGCAGGATTGACTAGTGTGACCAAAAACTACTTCGAGAATTTAGTTAGGGCTTTGGAAAATGGTCTAGCTGATGTGGACACTAATGGGGCAGCCTCCAGCAAAGCGACAAGCTCAAAAGGCGCGTCACCAAGCAGCAAGGGGAAAGGTGGAAGAGGAAGGGGAAACTTCCGAATCAGCATGTCCAGCAGAATGACCGATGATAATAGTCATTGGAGCTGCGACCAGTGTACCTACGCAAATGTCAGATCCGCCACAGTATGCCAGATATGCAATCAACCACGCCGATGA 1776 0.455 MDSEEDMHDANDLESLDDDYYSGGTEDAAMNYYSDYDDDADDYFDEADDSERLESRRPEQNFTILKESDIQQRQEEDITRVATVLSISRVDASILLRHYNWSVSKVHDAWFAEEDRVRKAVGLLDKPIIEHADARELTCGICFENHPRAKIEMASCGHPFCLSCWEGYISTSISDGPGCLMLRCPDPACGAAVGQDMINRVASDEDKQKYSRYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIERLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLNADGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDTNGAASSKATSSKGASPSSKGKGGRGRGNFRISMSSRMTDDNSHWSCDQCTYANVRSATVCQICNQPRR* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0579 591 ProSiteProfiles Zinc finger RanBP2 type profile. 563 591 IPR001876 -
Amo13g0579 591 MobiDBLite consensus disorder prediction 32 48 - -
Amo13g0579 591 SUPERFAMILY RING/U-box 289 337 - -
Amo13g0579 591 MobiDBLite consensus disorder prediction 524 566 - -
Amo13g0579 591 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Amo13g0579 591 SUPERFAMILY Ran binding protein zinc finger-like 562 590 IPR036443 -
Amo13g0579 591 SMART ibrneu5 283 344 IPR002867 -
Amo13g0579 591 SMART ibrneu5 208 270 IPR002867 -
Amo13g0579 591 SUPERFAMILY RING/U-box 209 277 - -
Amo13g0579 591 Pfam Ariadne domain 357 536 IPR045840 -
Amo13g0579 591 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 538 IPR031127 GO:0004842|GO:0016567
Amo13g0579 591 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Amo13g0579 591 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Amo13g0579 591 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 -
Amo13g0579 591 MobiDBLite consensus disorder prediction 524 540 - -
Amo13g0579 591 SUPERFAMILY RING/U-box 135 220 - -
Amo13g0579 591 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Amo13g0579 591 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 538 - -
Amo13g0579 591 MobiDBLite consensus disorder prediction 1 59 - -
Amo13g0579 591 Gene3D - 557 591 - -
Amo13g0579 591 Gene3D - 266 521 - -
Amo13g0579 591 SMART zf_4 565 589 IPR001876 -
Amo13g0579 591 ProSitePatterns Zinc finger RanBP2-type signature. 567 586 IPR001876 -
Amo13g0579 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 222 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0579 Amo-Chr13 7357445 7363418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0579 17 590 ARIADNE family AT1G65430 70.103 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0579 K11968 - gmx:100810427 1055.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0054 18 1200603 1205325 Amo13g0579 13 7357445 7363418 PCT
Amo13g0579 13 7357445 7363418 Amo18g0054 18 1200603 1205325 PCT