Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0571 ATGTCGTCAACCACCACCCCTCACGGTGGAGATTTCGACACGCCGACACTGGACATGGAGTCAGCGGAGCTCCTCCAAACCATATCGGAGCACGGCGGCTACGCCTACGTGAGAATGGCATCGCTGGCGGCGACCGGTGACGTCCGGGCCGCGGAGGCGGCGCTGGAGATGGCGTGGGAGCAGCTGCACTCAGGTCCGTGGCAGTCGGTGCTTCCGGTGTGGCGCGACGCGTACTCGATGGCATGCCTCCACGTGGCAAGGCACCACAACGGTAACGGCGAGTTCAAGGAGGCGCTTAGGGTTCTTGACATGGGGATCATCATGGGAGGGACGCTTCTCAGAAAGGATTTGGACTCTGCGATAGAGAAGGTTTCAGAGAGAGCCAACAGTTCCCGTAGGGTTTCTGAGGGAAGCTTCGAAGAAGGTTCGGTCAACAACTCCGAGCAACGAAGCCTTGTTCATCCGGAATTTCATGTGTCTCAGGTGCTCCAACTTTTACCTATCAAGTCCCTTTCTTCTAAGATTGTGGAGAAGAGATCTGGTTTGTCGCTGGACAAGTTCTTGAAAGATCATTACCTGGCTGGTTCACCGGTTATCATCAGTGATTGTATGGTTCACTGGCCGGCCAAGACAAAATGGAACAACATAGACTATTTGCTGAGAGTTGCTGGTGATCGTACAGTTCCCGTCGAGGTTGGCAAGAACTATTTATGTACAGACTGGAAGCAAGAGCTAATCACATTTTCAGAGTTGCTTCAGCGTATAAAATCCAATGGTGGTTCTCCAGGGGGTCCTACATATCTTGCCCAGCATCCATTATTTGATCAAATAAATGAGCTTCGGAAAGATATCTTTATTCCTGACTATTGTTTTGCCGGTGGAGGGGAGCTAAGATCTCTTAATGCTTGGTTTGGTCCAGCTGGAACAGTAACGCCATTACACCATGATCCACATCATAACATACTAGCTCAGGTTGTTGGAAAGAAGTACGTTAGGCTTTACTCAGCATCTTTGTCTGAGGAACTTTATCCCTACTCGGAGACAATGCGTACCAATTCCAGCCAGGTTGACTTAGATGACATAGATGAAAGGAAGTTTCCTAAAGTGCAAGACTTGGAATTTGTAGACTGTATTTTAGAGGAAGGTGATATGTTATATATCCCACCAAAGTGGTGGCACTATGTGCGGTCCCTAACTACAAGTTTCTCAGTTAGCTTCTGGTGGAGTGAGGGTGAATGTTCAGATGCACCCTAA 1254 0.4928 MSSTTTPHGGDFDTPTLDMESAELLQTISEHGGYAYVRMASLAATGDVRAAEAALEMAWEQLHSGPWQSVLPVWRDAYSMACLHVARHHNGNGEFKEALRVLDMGIIMGGTLLRKDLDSAIEKVSERANSSRRVSEGSFEEGSVNNSEQRSLVHPEFHVSQVLQLLPIKSLSSKIVEKRSGLSLDKFLKDHYLAGSPVIISDCMVHWPAKTKWNNIDYLLRVAGDRTVPVEVGKNYLCTDWKQELITFSELLQRIKSNGGSPGGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYVRLYSASLSEELYPYSETMRTNSSQVDLDDIDERKFPKVQDLEFVDCILEEGDMLYIPPKWWHYVRSLTTSFSVSFWWSEGECSDAP* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0571 417 SUPERFAMILY Clavaminate synthase-like 176 409 - -
Amo13g0571 417 ProSiteProfiles JmjC domain profile. 275 417 IPR003347 -
Amo13g0571 417 SMART cupin_9 266 416 IPR003347 -
Amo13g0571 417 Gene3D Cupin 174 409 - -
Amo13g0571 417 Pfam Cupin-like domain 186 409 IPR041667 -
Amo13g0571 417 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 32 410 - -
Amo13g0571 417 PANTHER - 32 410 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0571 170 408 Acyl Lipid Metabolism Gene Families AT3G45880 24.916 2.09e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo13g0571 Cupin_8 4e-48 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0571 K24444 - gmx:100813075 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0571 13 7225314 7228863 Amo13g0571 13 7225314 7228863 ECH