Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0565 ATGGAGTCAGATCTTCACCGGCACCCTCCCATGTTCCTGGACCACCACCACCACCACCACCACCACCACCATCACCAGCAGATGAACACCACCACCACCAACAATAACAACAATTCTTCGGGTCTAACGAGGTTCCGATCGGCACCAAGTTCGTATTTTTCTAGCATCATTGACAAGGAATTCTACGAAAGCATCTTCAACAAACCTTCAAGCCCAGAAACTGAGAAAATCCTCGCACGCTTCATGAATAGCCTTGCAAATGATGAACCTGAAGATGATTCATTACTTGGAGTAGCAGCTGCTACTTCTCCTACTACTAATAATAATAAAAATCTGTCACCGTCACCACAACCGCCACAACAAGTAGTTCAGCAAATCTCTCAAGTGAAGGAAGAAGAGATTAGTATTAATACCATTAATACCAATAATACCCTTCAGCCTCAGCCTTTGCCTTCTTCAATGAATAATGAATCATTGGTGCAGCAACCACAGCAGCAGATGAATAGTATGAGTAACAATAATTATGGATCTTTGAGTGGTAATAATCCTCCAACTCAGAGTTTTTATCAAAGTTCAGGAAGACCACCTTTGCCGAATCAGATGAAAACTGGTCGTGGAAATGCTTCGAATCTTATTAGGCATGGTAGTTCACCTGCTGGACTCTTTTCAAACCTGAACCTTGAAGGCTATGCTGCTTTAAGAGGCATGGGAACTATGGGAGCTGCTGCTAGCAACACTAGTGAGGATGCAAATTTTTCTCCGGTGGCAAGGTTGAAGAATCCACCAACCTTTTCATCCTCAGGACTAATGACTCCAATAGCTGAAATCAGGAGCACATCCAATACACTAAACAATCCAGAGAGTGCTGAAGCCTTTGCAGAAAGCCAGAGCAGCGATTTTATGTCGGGTTTACCCATTGGTTCTTGGGACGATTCTTCTTCTTCGATGATGTCCGACAACATTGCTGGTCGGAAAAGGTTCAGAGACGAAGATGTGAAACCATTTGCCGGGGCGAATGTGGCCGACACTCAGGTTAAGACCGAAGCAGGCCAGGCTCCTGGTGCTCCATTGGCTCACCAGTTGAGTATGCCAAACACATCATCGGAAATAGCAGCCATTGAGAAGTTTCTCCAGTGCTCGGATTCTGTCGTGTGCAAGATTCGTGCCAAGCGGGGCTGTGCTACTCATCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGAGAATGAGGAAACTACAGGATCTCGTCCCTAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGATTACATCAAAGAACTTCAAAACCAAGTTGAGACTCTTTCGGACAGTCAAGCCAAGTGTACGTGTGCACACAAGAAGCAGCAATAA 1398 0.4492 MESDLHRHPPMFLDHHHHHHHHHHHQQMNTTTTNNNNNSSGLTRFRSAPSSYFSSIIDKEFYESIFNKPSSPETEKILARFMNSLANDEPEDDSLLGVAAATSPTTNNNKNLSPSPQPPQQVVQQISQVKEEEISINTINTNNTLQPQPLPSSMNNESLVQQPQQQMNSMSNNNYGSLSGNNPPTQSFYQSSGRPPLPNQMKTGRGNASNLIRHGSSPAGLFSNLNLEGYAALRGMGTMGAAASNTSEDANFSPVARLKNPPTFSSSGLMTPIAEIRSTSNTLNNPESAEAFAESQSSDFMSGLPIGSWDDSSSSMMSDNIAGRKRFRDEDVKPFAGANVADTQVKTEAGQAPGAPLAHQLSMPNTSSEIAAIEKFLQCSDSVVCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKELQNQVETLSDSQAKCTCAHKKQQ* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0565 465 MobiDBLite consensus disorder prediction 12 27 - -
Amo13g0565 465 MobiDBLite consensus disorder prediction 28 44 - -
Amo13g0565 465 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 36 462 - -
Amo13g0565 465 MobiDBLite consensus disorder prediction 101 121 - -
Amo13g0565 465 Pfam Helix-loop-helix DNA-binding domain 398 444 IPR011598 GO:0046983
Amo13g0565 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 393 443 IPR011598 GO:0046983
Amo13g0565 465 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 462 - -
Amo13g0565 465 MobiDBLite consensus disorder prediction 138 195 - -
Amo13g0565 465 MobiDBLite consensus disorder prediction 1 44 - -
Amo13g0565 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 396 455 IPR036638 GO:0046983
Amo13g0565 465 SMART finulus 399 449 IPR011598 GO:0046983
Amo13g0565 465 Gene3D - 394 465 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0565 Amo-Chr13 7170646 7174327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0565 12 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 36.344 2.57e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo13g0565 HLH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0565 - - adu:107476789 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0565 13 7170646 7174327 Amo13g0565 13 7170646 7174327 ECH
Amo18g0072 18 1551861 1554774 Amo13g0565 13 7170646 7174327 ECH
Amo16g0160 16 2120094 2123039 Amo13g0565 13 7170646 7174327 ECH
Amo12g1782 12 85725200 85728152 Amo13g0565 13 7170646 7174327 ECH