Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0560 ATGTCCACCAACGACATGGATTTCCCATTACCACCCTCACCACCACCACCACCAACAACAACCCCTCACCCTCTTAACCTAGACAACCTTAAAGCCCTCAAAATCCTTGGCAAAGGTGCCATGGGCACCGTCTTCCTCGTCCACGACACCACCGCCACCTCTACCACCATGTTCGCCCTCAAGGTCGTCGACAAAACCACCCTCCACGGCAAGCTTGACGCCGACCGCCGCGCCCGCTGGGAAATCGAAGTCCTCTCCAAGCTCTCCGGCCACCCCTTCCTCCCTTCCCTCTTGGGCTCCCTCGACACTCCGGACTTCCTCGCCTGGGCCCTACCATACTGCCCCGGCGGCGACCTCAACCGTCTCCGCTACCGGCAAAACGACCGGGTGTTCTCCCCCTCCGTCATCCGGTTCTACCTCGCAGAGATTCTCTGCGCCCTCCACCACCTCCATTCCCTCGGTATCGCGTACCGTGACCTCAAACCGGAAAATGTCCTCATCCAACACAACGGTCACGTGACACTCACGGACTTCGACCTCTCACGCAAACTCACACCCAAAACCGTTGCAACAACCTCTCATACGGTTACAACAGTTGCAACTGACATTACCAACAAAGGTAACAGCATTCCGCCATCGGTTCCCGTGGATCCTAATAAGATTCCATCAGAACCTCCTCATCGCAGGAGACACCGCCGGAACTTCACCCGGTGGTTCCCGCTCCACTCGCCGGATGCAGCTCGTAAGAACTTGAAGAAAGTGAAATCCGCCAGAGTCAGTCCGGTGAGTCGACGCAGGACGAGTTTCATCGGCGACGGCGAGAGGTCCAACTCGTTCGTTGGTACCGAGGAGTACGTGGCGCCGGAGGTGGTGCGCGGCGAGGGACACGATTTCGCCGTGGATTGGTGGGCGCTGGGGATTCTGGCGTACGAGATGATGTACGGTACGACGCCGTTTAAGGGGAAGAACCGCAAGGATACGTTCAGGAATGTGTTAGTGAAGTCGCCGGAGTTCGTTGGAAAACGGTCGTCGCTGACGGATCTCATCGAGAAGCTTCTGGAGAAGGAACCGACGGCGAGATTGGGGTACACTCGCGGAGCCGATGAGATCAAGGAGCACAAGTTCTTCCGAGGTGTAAGGTGGGACATGTTGACGGAGGTGGTGCGGCCGCCGTTCATTCCGGGCAGGAACGACGCCGGAGCCGTTGAATCGATGGAGGGTTTGTTAGGTGGAGAGGGCGGCGTGAACATTAGAGATTATTTTCAAAGGTCGCGGTTGCCGCCGTCTTTGCCACCCTCGCCGTTGCCCTCGCCATCCGGCAAGTTCAAGAGGAATGTTTCTCTATCGGAATTCTAA 1356 0.5752 MSTNDMDFPLPPSPPPPPTTTPHPLNLDNLKALKILGKGAMGTVFLVHDTTATSTTMFALKVVDKTTLHGKLDADRRARWEIEVLSKLSGHPFLPSLLGSLDTPDFLAWALPYCPGGDLNRLRYRQNDRVFSPSVIRFYLAEILCALHHLHSLGIAYRDLKPENVLIQHNGHVTLTDFDLSRKLTPKTVATTSHTVTTVATDITNKGNSIPPSVPVDPNKIPSEPPHRRRHRRNFTRWFPLHSPDAARKNLKKVKSARVSPVSRRRTSFIGDGERSNSFVGTEEYVAPEVVRGEGHDFAVDWWALGILAYEMMYGTTPFKGKNRKDTFRNVLVKSPEFVGKRSSLTDLIEKLLEKEPTARLGYTRGADEIKEHKFFRGVRWDMLTEVVRPPFIPGRNDAGAVESMEGLLGGEGGVNIRDYFQRSRLPPSLPPSPLPSPSGKFKRNVSLSEF* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0560 451 Gene3D Phosphorylase Kinase; domain 1 28 113 - -
Amo13g0560 451 Gene3D Transferase(Phosphotransferase) domain 1 114 198 - -
Amo13g0560 451 MobiDBLite consensus disorder prediction 203 234 - -
Amo13g0560 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Amo13g0560 451 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 25 425 - -
Amo13g0560 451 SUPERFAMILY Protein kinase-like (PK-like) 11 393 IPR011009 -
Amo13g0560 451 MobiDBLite consensus disorder prediction 1 23 - -
Amo13g0560 451 PANTHER FLIPPASE KINASE 1-RELATED 25 425 - -
Amo13g0560 451 SMART serkin_6 30 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0560 451 Gene3D Transferase(Phosphotransferase) domain 1 272 395 - -
Amo13g0560 451 Pfam Protein kinase domain 32 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0560 451 Pfam Protein kinase domain 272 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0560 451 MobiDBLite consensus disorder prediction 8 23 - -
Amo13g0560 451 ProSitePatterns Protein kinases ATP-binding region signature. 36 61 IPR017441 GO:0005524
Amo13g0560 451 MobiDBLite consensus disorder prediction 423 451 - -
Amo13g0560 451 ProSiteProfiles Protein kinase domain profile. 30 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0560 Amo-Chr13 7116150 7117872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0560 25 428 AGC Kinase Gene Family AT1G51170 57.317 1.25e-153 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Amo13g0560 Pkinase 1.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0560 - K08286 adu:107476791 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0560 13 7116150 7117872 Amo13g0560 13 7116150 7117872 ECH