Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0559 ATGGACCATGACAAAATTGGTTGCCAGGCTCCCCCTGAAGGTCCTACATTGTGCATCAACAACTGTGGTTTTTTTGGTAGTGCTGCTACCATGAACATGTGTTCGAAGTGCCACAAGGACATGATGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCGTCCATTGGGAATATTATTAATGGGTCATCAAGCAGCAGCGGAAATGATCTTCTTGTTGCTACCACAAATGTGGATATCCCAGTCAATTCAGTAGAGCCTAAAACTATCTCAGGGCAACCTCTATTTGGTTCAGGTTCTGAGGAGATTGGTGAGGCAAAGCCGAAGGACGGTCCAAAACGTTGCAGTAGCTGCAACAAGCGGGTTGGTTTGACAGGGTTCAATTGTCGGTGCGGTAACCTTTTCTGCACTGTACATCGTTACTCAGACAAACATAACTGTCCATTTGATTACCGCACTGCTGGACAGGATGCCATAGCTAAAGCAAACCCAATTGTCAAGGCTGAGAAGCTTGACAAGATTTAA 522 0.4617 MDHDKIGCQAPPEGPTLCINNCGFFGSAATMNMCSKCHKDMMLKQEQAKLAASSIGNIINGSSSSSGNDLLVATTNVDIPVNSVEPKTISGQPLFGSGSEEIGEAKPKDGPKRCSSCNKRVGLTGFNCRCGNLFCTVHRYSDKHNCPFDYRTAGQDAIAKANPIVKAEKLDKI* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0559 173 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Amo13g0559 173 SUPERFAMILY AN1-like Zinc finger 99 168 IPR035896 -
Amo13g0559 173 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Amo13g0559 173 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Amo13g0559 173 ProSiteProfiles Zinc finger AN1-type profile. 108 154 IPR000058 GO:0008270
Amo13g0559 173 Pfam AN1-like Zinc finger 114 150 IPR000058 GO:0008270
Amo13g0559 173 Gene3D - 97 169 IPR035896 -
Amo13g0559 173 Gene3D - 8 66 - -
Amo13g0559 173 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 173 - -
Amo13g0559 173 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 173 - -
Amo13g0559 173 Pfam A20-like zinc finger 17 39 IPR002653 GO:0003677|GO:0008270
Amo13g0559 173 SMART AN1_Zf_4 114 151 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0559 Amo-Chr13 7087055 7090076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0559 8 173 C2H2 Transcription Factor Family AT3G52800 41.243 2.07e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0559 - - gmx:100499857 286.189