Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0549 ATGATGATTACCTTCCAAGGAAGAAGAAGAAGAATGAGGAAGCCTAGTGAGCAATCATCATCATCGAAAAACAACAAGTTGAGAAAAGGGTTGTGGTCACCGGAGGAAGATGACAAGTTGATGAACTACATGATGAACAATGGACAAGGTTGTTGGAGTGATGTTGCTAGGAATGCGGGCCTCCAAAGGTGTGGTAAGAGTTGTCGCCTTCGATGGATCAATTATCTCAGACCTGACCTTAAACGTGGTGCATTCTCTCCCCATGAACAACAACTCATCATCCATTTCCACTCCCTTCTTGGAAACAGATGGTCACAAATAGCTGCGCGTTTACCTGGAAGAACCGACAATGAAATCAAGAACTTTTGGAATTCAACAATCAAGAAAAGACTCAAGCAGCAGCAGCAGCAATCAACTACTTCACCAAATGCAAGCGATGATCATGATTATTCCTCTTATGACCCTAACAACAACAACAAAGACCTCAACATTGTAGGAGGAGGAGAAGGGCTTAATAGTAATTCTACTACACAACAATTTCATCAACACCATCTTCATTTTATGCCACTAGTGTTCAATTCTTCTTCTTCTTCATCATCATCATCAATGCAAAACACAGTTCTCAACACCATAATTGACAGGTTGCCTATGCTAGATCATGGTCTTAACATTCCACCAGCTAATGGATTCAACAACAAAGGCTTTTATGATTTGGAAAATGGTGTGATTGGGGGTGTAGATAATAATAATAATAATATTAATAATCTTGGGGCTGAAGAAGTAGTAGTAGGGGATAATACATATACTAATACTAACACTTTTTCTGACCATGATAATAATAACCTAAAAGTGTTGGAGAGTGCATGCATTAATAACAATACTAATTACTTTGATGACATAAACAACAAGATCATGAAGGGTGGGGTGGTGGAGAATTTGTTTCATGAAGAGTTGACCTTGGGAGAGTGGGACTTGGAAGAATTCATGAAAGATGTTACATCTTTTCCCTTTCTTGCTGATTTTTCAAATTGA 1032 0.3857 MMITFQGRRRRMRKPSEQSSSSKNNKLRKGLWSPEEDDKLMNYMMNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPHEQQLIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKQQQQQSTTSPNASDDHDYSSYDPNNNNKDLNIVGGGEGLNSNSTTQQFHQHHLHFMPLVFNSSSSSSSSSMQNTVLNTIIDRLPMLDHGLNIPPANGFNNKGFYDLENGVIGGVDNNNNNINNLGAEEVVVGDNTYTNTNTFSDHDNNNLKVLESACINNNTNYFDDINNKIMKGGVVENLFHEELTLGEWDLEEFMKDVTSFPFLADFSN* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0549 343 SMART sant 28 78 IPR001005 -
Amo13g0549 343 SMART sant 81 129 IPR001005 -
Amo13g0549 343 CDD SANT 84 124 IPR001005 -
Amo13g0549 343 Gene3D - 26 82 - -
Amo13g0549 343 PANTHER MYB TRANSCRIPTION FACTOR 17 342 - -
Amo13g0549 343 SUPERFAMILY Homeodomain-like 27 123 IPR009057 -
Amo13g0549 343 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Amo13g0549 343 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Amo13g0549 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 76 IPR017930 -
Amo13g0549 343 MobiDBLite consensus disorder prediction 129 178 - -
Amo13g0549 343 PANTHER MYB DOMAIN PROTEIN 55 17 342 - -
Amo13g0549 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Amo13g0549 343 CDD SANT 32 76 IPR001005 -
Amo13g0549 343 Gene3D - 83 153 - -
Amo13g0549 343 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Amo13g0549 343 MobiDBLite consensus disorder prediction 1 31 - -
Amo13g0549 343 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0549 Amo-Chr13 6966845 6970127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0549 10 341 MYB Transcription Factor Family AT3G08500 44.638 6.54e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g0549 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0549 K09422 - gmx:100785810 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0549 13 6966845 6970127 Amo13g0549 13 6966845 6970127 ECH