Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0533 ATGAAGTTCCTGAGACGCTCGGGTGTAGATCAGAACTTTTTCGGTTCCCTCTCTGTTGTTGATGACCAATTTGTTCCCAAGGTTGGAATGACTTTTAAAACCCTTGAAGATACTGCAAAATTTTACAAGGACTATGCCAAGGCTGCAGGTTTTTCTACAAGAGTTCAGAGTACAAATAAAAAGGGAAACGAAATTAAGAATCAATTGATTACATGTAGTAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACAAATCCCACAGCTGGTTTAAATTGTCCTACAAGAATTTATATACACACATTGAAGGATGTTGGTGCTTGGATCATTTCGAAGATCGTGCTGCATCATTCACACCCTTGCTGTCCAACTCAAGCAGAGATGCTCAAACAGCATAGGGAACTAAGCATGTTCGTTCGTCGTACAATAGAGAATAACGAGGAGGCCGGGATGAAAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTTATTACCCAGAACAGCTCGCTTATTCAATTTGTCAAACAATACGATAATTGCCTCGAAAGTAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAATTTAGGGAAGTCCAAGCACAATTTAGAGGAAAGGCGAATTGCATCACTAGATTAACGAATTCCGCTCTAGGCTATTCAGTATACGAAGTTGGAGAACAAGTTTTCAGCTCAATATTCAACAAGTTTGTGATTACTTACAACTCAGTAGCAGCCGAGGTAAAATGTCAATGCTTATTATTCGAGTCAAGAGGGATATTGTGCCGTCACGCACTAAGTGTGTTAAGCTTTGAACGAGTAAGCCAAGTGTCATCGAGATATATATTGGAACGATGGAGAAAGAAGAGGTTTAACGAATTGGTTTTTCGTTCTCAAAATATTTGTGAATTTGCATTAGAATCGGAGGAGCTGACTGCCATTATGCACCGTGCGTACGATAACGTCATGGTTGAGATGGAAGCATTGAAAGCCAAAAGGAAGGGGACATCTTCGTTATCTCACGAAGATGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCTCCAAGGATTGCAAATGCCTCAAAGAAGAAGAAAACGAAAGCTTTAAACGAGTTAAACGTCTTTGATGCTGCATCAGTGGTGCGTCCAAATTCCAGCCAATATCAAGGACGTGTTATGAATTATCAGTTTAGGCAACCAGCAGCAGGGGATAACTTTTGGAATCTGGGAAGCATATTCTACTCTATAGTGGTCCACCTCGTCCTACAGTTAAAAAGAATATTCTGTTTAATCAACCATGTTAATTGA 1407 0.4044 MKFLRRSGVDQNFFGSLSVVDDQFVPKVGMTFKTLEDTAKFYKDYAKAAGFSTRVQSTNKKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPTRIYIHTLKDVGAWIISKIVLHHSHPCCPTQAEMLKQHRELSMFVRRTIENNEEAGMKSTQRSESMHSFFNKFITQNSSLIQFVKQYDNCLESREQAERESDAADFHTVIPCATKSSIEAQFQDVYTHQKFREVQAQFRGKANCITRLTNSALGYSVYEVGEQVFSSIFNKFVITYNSVAAEVKCQCLLFESRGILCRHALSVLSFERVSQVSSRYILERWRKKRFNELVFRSQNICEFALESEELTAIMHRAYDNVMVEMEALKAKRKGTSSLSHEDANLESVNELQSPPRIANASKKKKTKALNELNVFDAASVVRPNSSQYQGRVMNYQFRQPAAGDNFWNLGSIFYSIVVHLVLQLKRIFCLINHVN* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0533 468 Pfam SWIM zinc finger 279 302 IPR007527 GO:0008270
Amo13g0533 468 SMART 26again6 280 307 IPR006564 GO:0008270
Amo13g0533 468 Pfam FAR1 DNA-binding domain 40 125 IPR004330 -
Amo13g0533 468 PANTHER OS03G0843700 PROTEIN 21 142 - -
Amo13g0533 468 PANTHER OS03G0843700 PROTEIN 154 387 - -
Amo13g0533 468 ProSiteProfiles Zinc finger SWIM-type profile. 269 305 IPR007527 GO:0008270
Amo13g0533 468 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 154 387 IPR031052 GO:0006355
Amo13g0533 468 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 21 142 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0533 Amo-Chr13 6783227 6787111 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo13g0533 FAR1 5.1e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0533 - - adu:110280503 460.299