Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0506 ATGGCATTCACACTAGAAGAGAGGAGGAGTAGTAACATTGAAGAGGAGGAGAACATGAATAAGATGAAGGTGATGATAATGATGATGGATTCATCATCATCACAAAAGAAGTTACCATCATCATCATCAGTGCCTGCACCATTCCTGACAAAGACATACCAACTAGTTGATGATCCTATGACTGACCACATAGTGTCATGGGGTCATGATGGTCATTCCACATCATCATCATCATCATTTGTTGTTTGGAGACCTCCTGAGTTTGCCAGAGACCTTCTTCCCAACTATTTCAAACACAACAACTTCTCCAGCTTTGTTAGGCAACTCAATACCTATGGATTCAAGAAGGTAGTTGCTGATAGATGGGAATTTGCAAATGAGTATTTCAGAAAAGGAGCAAAACATCTTCTATGTGAAATCCATAGAAGAAAAACCCCTCATCACCATCATCATCATCATCAAGAGAATAATAATGAAGCTCTATGTTGGATTGATTCTTCTACAACTCCTACTACTATTCCTTCTATTCCTACTTCATTATTACTACCTTCTCCTAAATCACCATCATGTTCTTCATTAGGAGGAGGCACTAATAGTGATCATCATCACCATCAACATAATCATATCTTAGCAGCACTTTCTGAGGATAATCAAAGGCTAAGGAGAAAGAACTTGATGCTCTTATCTGAACTAACTCACATGAAGAATCTCTACAATGATATCATCTACTTCATCCAAAACCATCTCAAACCTGCTTCTTCTCCCTCTCATCATAATCAAACATTAACTATTCCAAAGCTGGTGGAGTTGGATTCATCACCAAAGGGTAGTAGAATGATGATGAGTATTAGTGATGATGATGATGATGATGATGATTACAACAATAATAATTGTAGTTCTTCTTCAGTGAAGCTCTTTGGTGTTCCTCTTAGTGGTAAAAAGAGATTACACCCAGATAATATTTTTCAACAAGATTAA 978 0.3712 MAFTLEERRSSNIEEEENMNKMKVMIMMMDSSSSQKKLPSSSSVPAPFLTKTYQLVDDPMTDHIVSWGHDGHSTSSSSSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKTPHHHHHHHQENNNEALCWIDSSTTPTTIPSIPTSLLLPSPKSPSCSSLGGGTNSDHHHHQHNHILAALSEDNQRLRRKNLMLLSELTHMKNLYNDIIYFIQNHLKPASSPSHHNQTLTIPKLVELDSSPKGSRMMMSISDDDDDDDDYNNNNCSSSSVKLFGVPLSGKKRLHPDNIFQQD* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0506 325 MobiDBLite consensus disorder prediction 183 198 - -
Amo13g0506 325 Coils Coil 210 230 - -
Amo13g0506 325 Pfam HSF-type DNA-binding 48 143 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g0506 325 Gene3D - 41 145 IPR036388 -
Amo13g0506 325 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 16 316 - -
Amo13g0506 325 MobiDBLite consensus disorder prediction 183 205 - -
Amo13g0506 325 SMART hsfneu3 44 143 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g0506 325 ProSitePatterns HSF-type DNA-binding domain signature. 93 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g0506 325 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 316 IPR027725 -
Amo13g0506 325 SUPERFAMILY "Winged helix" DNA-binding domain 45 143 IPR036390 -
Amo13g0506 325 MobiDBLite consensus disorder prediction 273 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0506 Amo-Chr13 6513849 6515144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0506 43 317 HSF AT1G46264 47.040 1.04e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo13g0506 HSF_DNA-bind 2.5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0506 K09419 - gmx:100527682 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0506 13 6513849 6515144 Amo13g0506 13 6513849 6515144 ECH