Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0483 ATGGGTGAGGAAGTTAGGATGACCGACTACCAAGACGACGACGGAGTCGCCGACTGGGAATTGGGCCTTCCGGCGGCCCACGATCTCACCCCGCTCTCTCAGCTCTTGATCCCGCCGGAGCTCGCCTCCGCCTTCAGCATCTCGCCGGAGCCACACCGTTCCCTTGTCGACGTTAACCGCGCCTCAAAGAACACTCTCTCCACCCTCCGTACCGGCGTCAACGCCTTCTCCTCCTCCAACCTCAACCCCTTCCAAGACGAGGGAAACGATCCCGCCGGAGACGACGAGGAAGAGATCGTTCCGGACGGTTCGGGCTCCAATTCGAGGAAGCTCCGGAAGGTTGATTGTGCGGAGGAAGCGGATTCTGTGCCGCGCACCGACAGTGCTGCCGCCGTGAAGCGACCGAGGCTTGTGTGGACACCGCAGCTGCACAAGCGATTCGTGGACGTGGTGGCGCACCTAGGGATCAAGAACGCGGTGCCGAAGACGATCATGCAGCTTATGAACGTGGAAGGGTTGACCCGAGAGAACGTCGCCAGCCACCTCCAGAAGTATCGCCTCTATCTTAAGCGGATGCAAGGGCTCTCCGCCGACGGACCTTCTTCCTCCGACCACCTCTTCGCCTCCACGCCGGTTCCTCAAAGCCTCAACGACAGCGGCGGAGGAGGAGGAAGTGGCCACTCCCGTGGGAACGGGCACCTTCCGGTTCCGGTCCCGATGCATTATCCTCCGGCGGCAATGATGCCAATGCCGATGCTCAGCATGCCACATGGCTTTCATCATCACCATGTGTTGCAGCAGAGGGATTGGTCCTACCCACCACATGTCACTCCTAATGATAAATGA 846 0.6028 MGEEVRMTDYQDDDGVADWELGLPAAHDLTPLSQLLIPPELASAFSISPEPHRSLVDVNRASKNTLSTLRTGVNAFSSSNLNPFQDEGNDPAGDDEEEIVPDGSGSNSRKLRKVDCAEEADSVPRTDSAAAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSADGPSSSDHLFASTPVPQSLNDSGGGGGSGHSRGNGHLPVPVPMHYPPAAMMPMPMLSMPHGFHHHHVLQQRDWSYPPHVTPNDK* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0483 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 190 IPR017930 -
Amo13g0483 281 Pfam Myb-like DNA-binding domain 138 186 IPR001005 -
Amo13g0483 281 MobiDBLite consensus disorder prediction 199 238 - -
Amo13g0483 281 MobiDBLite consensus disorder prediction 108 122 - -
Amo13g0483 281 MobiDBLite consensus disorder prediction 77 130 - -
Amo13g0483 281 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 135 187 IPR006447 GO:0003677
Amo13g0483 281 Gene3D - 131 193 - -
Amo13g0483 281 MobiDBLite consensus disorder prediction 199 224 - -
Amo13g0483 281 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 263 IPR044841 GO:0003700|GO:0006355
Amo13g0483 281 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 263 - -
Amo13g0483 281 SUPERFAMILY Homeodomain-like 132 191 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0483 Amo-Chr13 6265204 6266049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0483 1 263 G2-like Transcription Factor Family AT3G46640 53.169 1.29e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo13g0483 Myb_DNA-binding 1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0483 - - aprc:113858844 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0483 13 6265204 6266049 Amo13g0483 13 6265204 6266049 ECH