Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0482 ATGAACTTCGAAACGCAACCTGGAACGGCGTCGTTTTGGTGTTACAGCTGCTCAAGCTTCGTTCACATCATGGACGAAAGTGAAACCAACATCCTCTGCCCTAACTGCAATAGCGGTTTTGTCGAACAGATCCGACCCGACCCGTCTCCGGACCACTTTTTCAGCCCCTTCTCCGACGTCTCCGATTCCAGCCACCAAGGTTTCCGCCGTCGCCGCCGCAGTGCCGCGGGAAACCGCTCCCCTTTCAATCCTGTGATTGTTCTCCGTGGCCCCAGTGATGACGCCGATCGTGAAGGTGGTGCTGCCTTCGAGCTATACTACGACGACGGCGACGGAAGCGGTTTACGGCCTCTGCCGCCAGCTATTGCGGAGTTTCTGTTAGGTTCGGGATTTGACCGGCTTTTGGAGCAGTTCTCGCAGATCGAGACGAACGCGTTTGGGCGGCTGGAGAATCCACCCGCTTCTAAGGCGGCGATAGAGTCGATGCCGGCGGTGGAGATCGCGGAGGCGCACGTGCGTGCCGAAGCGCACTGCGCCGTGTGTAAGGAAGCATTTGAGCTACGGGCGGAGGCGCGTGAGCTTCCATGTAAGCACATATACCACACCGATTGCATCGTTCCGTGGCTTTCGATTCGGAATTCGTGCCCTGTGTGTCGACACGAGCTTCCTTCGGATCAGAATTCGTTGATGTCGGGTTCAATCGACGAGGAATCGATTGGATTAACGATTTGGAGGCTGCCGGGAGGGGGATTCGCCGTCGGTAGATTTTCTGGTGGCCGGAGAGCAGGTGAAAACCACCTTCCCGTCGTGTACACGGAGATGGACGGAGCACTGAACCCTAACGGAGCTCCGAGGAGGATTTCGCGTTCTGTGAGGAGCAATAGGTTTGGAAACGTTGACCCTGAAAGCAATGTCCTTTTTACATTTGAAGTTGTGGTTCTTCTGAAACCCGTTCGTGGATAA 963 0.5576 MNFETQPGTASFWCYSCSSFVHIMDESETNILCPNCNSGFVEQIRPDPSPDHFFSPFSDVSDSSHQGFRRRRRSAAGNRSPFNPVIVLRGPSDDADREGGAAFELYYDDGDGSGLRPLPPAIAEFLLGSGFDRLLEQFSQIETNAFGRLENPPASKAAIESMPAVEIAEAHVRAEAHCAVCKEAFELRAEARELPCKHIYHTDCIVPWLSIRNSCPVCRHELPSDQNSLMSGSIDEESIGLTIWRLPGGGFAVGRFSGGRRAGENHLPVVYTEMDGALNPNGAPRRISRSVRSNRFGNVDPESNVLFTFEVVVLLKPVRG* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0482 320 Pfam zinc-ribbon 11 44 IPR039525 GO:0061630
Amo13g0482 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 225 IPR013083 -
Amo13g0482 320 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Amo13g0482 320 Pfam Protein of unknown function (DUF1117) 239 295 IPR010543 -
Amo13g0482 320 Pfam Ring finger domain 177 219 IPR001841 -
Amo13g0482 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 7 299 - -
Amo13g0482 320 CDD RING-H2_RNF126_like 178 219 - -
Amo13g0482 320 SMART ring_2 178 218 IPR001841 -
Amo13g0482 320 SUPERFAMILY RING/U-box 158 225 - -
Amo13g0482 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0482 Amo-Chr13 6243447 6245786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0482 117 232 C3H Transcription Factor Family AT5G01980 47.414 2.50e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0482 - - gmx:100804867 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0482 13 6243447 6245786 Amo13g0482 13 6243447 6245786 ECH
Amo18g0146 18 2325485 2328337 Amo13g0482 13 6243447 6245786 ECH
Amo18g0146 18 2325485 2328337 Amo13g0482 13 6243447 6245786 PCT
Amo13g0482 13 6243447 6245786 Amo18g0146 18 2325485 2328337 PCT