Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0480 ATGGAAGATCAGTTTTTCTCTGAGGGAGAGGGAATTGGGTATTGGACACCTCCTGGCGCTCAATTCGATGGACCAAGCATGATAGACAACGGAATAAAAAATCTTGTATCAGAGGAGATGCTTGACAACCTCCCTGATCTCATGAACTTCGATAACCTTGCTGGTTGGGGTAATATTCCATCTGTGACTGATCATAATTTAGATAATGGAATTTCATCACTTGCCTCTATGCCGTATTCTCCACCTGATGCATTCAGTTTAGTGGAACAGGCCAATGATCCATACTTTATGACAAAAGATTGTGGAAATTATAATGCTATTGAAACCTCCTTGGGTTTCGATGAGAAGGTTGTGTTACAGCAATTGGAGACCCAACTTGGGTTGTCAGAAGATGCAAATGATATGAATAACATAAATGGATCACTTCAAGAATTGAGTGCTGCTGACATGGGAAATTGCTTGGTGCCTAGACCATTTGCTTGGTCGCTTGATGAGAAAATGCTGAGGGCTATGAACTTGTTTAAGGAATCAGTTGGTGATGGAATATTGACACAAGTTTGGGCACCAATGAAGCATGGTAATGACTTCATCTTAAGCACAAGTGAGCAACCCTATTTGCTAGATCACATGCTAGCTGGATATCGAGACGTGTCGAGGGAATTTACCTTTTCTGCTGAAGACAAACCAGGGTCTTTTCCAGGGCTTCCCGGACGTGTGTTTATGTCCCAAATTCCTGAATGGACCTCCAATGTTGGGTACTACAATAAAAGTGAGTACCTGAGGGTGGAGCATGCAATTAATCACGAGGTTCGTGGATCAATTGCGGTTCCCATAATTGATACGCTCGCTGAACCACCTTGTTGTGCTGTACTAGAACTTGTCACTACAAAGGAAAAGCCTGATTTTGACAAAGAACTAGAAATTGTTAGCAGTGCACTCCAGCTTGTTAATTTAAGGACTACTACGCCTCCACGACTTATGTCCCAGTGTCTATCAAATAACAAAAGAGCAGCTTTAACAGAGATAATTGATGTGTTACGAGCTGTGTGTCATGCGCATAGTTTGCCACTGGCATTGACATGGATCCCCTGTTATTATAGTGAGGGGATAGGAGATGAAGCTTCAAGAATACGGATTAAAGATGGGGTTAAAATTCCTGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTTGCTATATAAATGATATTGTGGTAGGAGGATTTGTTCATGCATGTGTTGAACATTATCTCGAGGAAGGGCAAGGTGTAGCTGGGAAAGCTCTTCAATCAAATCGTCCATTCTTCTATTCCGATGTGAAGGCCTATAATATTAGTGAATATCCCCTTGTTCACCATGCGCGAAAATATAAGTTGAATGCTGCCGTTGCAGTCAGGCTAAGGAGTATTCATACCAATGATGATGATTACATAATAGAATTCTTTCTACCTGTCAATATGAATGGAAGTCAAGAACAGCAACTTTTATTAGACAATCTATCAGATACTATGCAGAGAATGTGTCAGAGTTTGAGGACAGTTTCGGATGCTGAATTATACGGGATAGAAGGTTCGCAAGTGCAGTTTTCAAAGGAAGAAGGCTCGAGTTTTTGCTCTATGTCTAGGGGAAACTCTCATATGGCGCCGGATGGTGACCATGATTCGGTCCAGCCTATGTCCTTGACAAACAATGAAACTGAAGCTGCTCATAACCAGGCAATGGATGGATCAAGAAAGCAGATTGAGAAAAAGAAAAGTCCAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCGGTAGTCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACAACCCTGAAAAGGATATGCAGGCAACACGGAATTGCAAGATGGCCATCGCGCAAGATCAATAAAGTTAATCGTTCGTTAAAAAAAATACAAACCGTGCTTGACTCAGTCCAGGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACAAGGGGGGATTTATGCCAGGAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTCCGGAAGAAATGTTCTGGAAAATATCCTGATCCTGCATCAAAAGATGCAGTCACCGTATCTCCGGCATCTGGTGGCAAAGGTGAGAATTTAGCTTCTGCATTTAGACATGCTTATATCTAA 2181 0.4182 MEDQFFSEGEGIGYWTPPGAQFDGPSMIDNGIKNLVSEEMLDNLPDLMNFDNLAGWGNIPSVTDHNLDNGISSLASMPYSPPDAFSLVEQANDPYFMTKDCGNYNAIETSLGFDEKVVLQQLETQLGLSEDANDMNNINGSLQELSAADMGNCLVPRPFAWSLDEKMLRAMNLFKESVGDGILTQVWAPMKHGNDFILSTSEQPYLLDHMLAGYRDVSREFTFSAEDKPGSFPGLPGRVFMSQIPEWTSNVGYYNKSEYLRVEHAINHEVRGSIAVPIIDTLAEPPCCAVLELVTTKEKPDFDKELEIVSSALQLVNLRTTTPPRLMSQCLSNNKRAALTEIIDVLRAVCHAHSLPLALTWIPCYYSEGIGDEASRIRIKDGVKIPGEKTVLCIEESACYINDIVVGGFVHACVEHYLEEGQGVAGKALQSNRPFFYSDVKAYNISEYPLVHHARKYKLNAAVAVRLRSIHTNDDDYIIEFFLPVNMNGSQEQQLLLDNLSDTMQRMCQSLRTVSDAELYGIEGSQVQFSKEEGSSFCSMSRGNSHMAPDGDHDSVQPMSLTNNETEAAHNQAMDGSRKQIEKKKSPVEKNVSLSVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYKGGFMPGGSSNQEINAHKSSLFRKKCSGKYPDPASKDAVTVSPASGGKGENLASAFRHAYI* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0480 726 Pfam RWP-RK domain 591 639 IPR003035 -
Amo13g0480 726 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 716 - -
Amo13g0480 726 ProSiteProfiles RWP-RK domain profile. 571 659 IPR003035 -
Amo13g0480 726 PANTHER PROTEIN NLP8 5 716 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0480 Amo-Chr13 6220238 6223975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0480 1 683 NLP Transcription Factor Family AT2G43500 52.217 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo13g0480 RWP-RK 8.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0480 - - ahf:112736799 1409.43