Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0473 ATGAACTTCGAAACGCAACCTGGAACGGCGTCGTTTTGGTGTTACAGCTGCGCAAGCTTCGTTCACATCATGGACGAAACTGAAACCAACCACATCCTCTGCCCTAACTGCAATAGCGGTTTTGTCGAACAGATCCGACCCGACCCGTCTCCGGACCACTTTTTCAGCCCCTTCTCCGACGTCTCCGATTCCAGCCACCAAGGTTTCCGCCGTCGCCGCCGCAGTGCCGCGGGAAACCGCTCCCCTTTCAATCCTGTGATTGTTCTCCGTGGCCCCAGCGATGACGCCGATCGTGAAGGTGGTCCTGCCTTCGAGCTATACTACGACGACGGCGACGGAAGCGGTTTACGGCCTCTGCCGCCAGCTATTGCGGAGTTTCTGTTAGGTTCGGGATTTGACCGGCTTTTGGAGCAGTTCTCGCAGATCGAGACGAACGCGTTTGGGCGGCTGGAGAATCCACCCGCTTCTAAGGCGGCGATAGAGTCGATGCCGGCGGTGGAGATCGCGGAGGCGCACGTGCGTGCCGAAGCGCACTGCGCCGTGTGTAAGGAAGCATTTGAGCTACGGGCGGAGGCGCGTGAGCTTCCATGTAAGCACATATACCACACCGATTGCATCGTTCCGTGGCTTTCGATTCGGAATTCGTGCCCTGTGTGTCGACACGAGCTTCCTTCGGATCAGAATTCGTTGATGTCGGGTTCAATCGACGAGGAATCGATTGGATTAACGATTTGGAGGCTGCCGGGAGGGGGATTCGCCGTCGGTAGATTTTCTGGTGGCCGGAGAGCAGGTGAAAACCACCTTCCCGTCGTGTACACGGAGATGGACGGAGCACTGAACCCTAACGGAGCTCCGAGGAGGATTMCGCGTTCTGTGAGGAGCAATAGGGTSAGGGAAAGTCATGGAATTWGTAGGGTTTTTCGAAATTTCATGTCAATTTTTGGAAGATTGGGTTCTAGCAGGTCTAGATTTTTTGGTCCGGAACGAGTTTCGCTGAGATCGGTGTTCAATAGGAACTCGCGGAGGCGAACATGGAGATTTGAAGATTGA 1050 0.5505 MNFETQPGTASFWCYSCASFVHIMDETETNHILCPNCNSGFVEQIRPDPSPDHFFSPFSDVSDSSHQGFRRRRRSAAGNRSPFNPVIVLRGPSDDADREGGPAFELYYDDGDGSGLRPLPPAIAEFLLGSGFDRLLEQFSQIETNAFGRLENPPASKAAIESMPAVEIAEAHVRAEAHCAVCKEAFELRAEARELPCKHIYHTDCIVPWLSIRNSCPVCRHELPSDQNSLMSGSIDEESIGLTIWRLPGGGFAVGRFSGGRRAGENHLPVVYTEMDGALNPNGAPRRIXRSVRSNRVRESHGIXRVFRNFMSIFGRLGSSRSRFFGPERVSLRSVFNRNSRRRTWRFED* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0473 349 MobiDBLite consensus disorder prediction 65 94 - -
Amo13g0473 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 226 IPR013083 -
Amo13g0473 349 CDD RING-H2_RNF126_like 179 220 - -
Amo13g0473 349 Pfam Protein of unknown function (DUF1117) 240 324 IPR010543 -
Amo13g0473 349 Pfam zinc-ribbon 11 45 IPR039525 GO:0061630
Amo13g0473 349 Pfam Ring finger domain 178 220 IPR001841 -
Amo13g0473 349 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Amo13g0473 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 7 303 - -
Amo13g0473 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 303 - -
Amo13g0473 349 SUPERFAMILY RING/U-box 159 226 - -
Amo13g0473 349 SMART ring_2 179 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0473 Amo-Chr13 6141726 6143626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0473 118 233 C3H Transcription Factor Family AT5G01980 47.414 3.42e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0473 - - gmx:100792874 459.914