Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0436 ATGGAAGACGTGTATTATTCGGCATTGATTTGCCAACAGAGAGATGAAGAATTGAGGCAGAAGCTTGAGGATGCAAAACATGAAATTGAAATCTTGAAGAATGTGAAGTTGGAACTCTTGAATATGTTGAACATGGCATACCAAGAGAGGGATGAAGCAAAGTTTCAACTACAGAAACTAATTAACAATTTCATGCCATTTGATGCCAATAATAACAATTATTCTTATTCAAGCATCACAGAATCCAAGAGTGTGTCACATGATTCACTAGATTCTCCTTTCTTTGACACTGTATCTTCTCCTGAATTCTCAAACATCAACAATGTAGTTGTTGATTCTTCCAACAACAACAACAACATGGGGCATTATCTATATCAGAACATGGTTCAAGTTCAAGACAGGAATTTCTCAAAACATGATCCTGCTGCTGAGATTATTGATTTTCTTGCCAAAGGTAGAGTCTTGCCTCAAAAGGGTAAGCTCCTTGAAGCTGTGCAAGAATCTGGTCCATTGCTTCATACCCTTCTCCTTGCAGGGCCACTTCCTAATTGGAGAAACCCTCCACCATTGCAACAAATCAATGTTCCACACTTAACCATCAATGAGGATTATTCTGTCAATTCTAATTCCTTTGTAGAACATGGGAATTCTTTATTGCTGCAGCCAAAGCTCCTTCCATCATCACAATCCTTATTGTGTTCTTCGAATCCTCTATCGGCATGTTCGGCTTTTATGCTCAACTTTGATGGCACTGCTGGATCATCATCATCATCATGGAACAATGCACGGCAATTGAGTTCATCAAGTCCTAGTGTTAGGAACCATGCTCATAGGGGACATGGAGATGGATTAGATATTGAAGATCCTTCTTCTCCACAGTTTCAAAACAGTGGTTTGGAATCTTCGGCTGTTGGCTCTCTTCCAATGCACCAGTTCAAGGTAAATGAAGGAGGAGAACACAAGCAGATTAACACAGACTGTGCCATTTGTCTTGGCGAGTTCGAAGAAGGGGAGTGGTTGAAACATCTTCCAAATTGCTCCCATGGCTTCCATGTTCCGTGCGTGGACGAGTGGTTTCGGTCTCATTCAAGTTGTCCTCTCTGTAGAACCTCTCTCTCTGTTATGTCCTAA 1131 0.4094 MEDVYYSALICQQRDEELRQKLEDAKHEIEILKNVKLELLNMLNMAYQERDEAKFQLQKLINNFMPFDANNNNYSYSSITESKSVSHDSLDSPFFDTVSSPEFSNINNVVVDSSNNNNNMGHYLYQNMVQVQDRNFSKHDPAAEIIDFLAKGRVLPQKGKLLEAVQESGPLLHTLLLAGPLPNWRNPPPLQQINVPHLTINEDYSVNSNSFVEHGNSLLLQPKLLPSSQSLLCSSNPLSACSAFMLNFDGTAGSSSSSWNNARQLSSSSPSVRNHAHRGHGDGLDIEDPSSPQFQNSGLESSAVGSLPMHQFKVNEGGEHKQINTDCAICLGEFEEGEWLKHLPNCSHGFHVPCVDEWFRSHSSCPLCRTSLSVMS* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0436 376 PANTHER ENABLED-LIKE PROTEIN (DUF1635) 1 359 IPR012862 -
Amo13g0436 376 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 359 - -
Amo13g0436 376 ProSiteProfiles Zinc finger RING-type profile. 327 369 IPR001841 -
Amo13g0436 376 MobiDBLite consensus disorder prediction 257 274 - -
Amo13g0436 376 Pfam Protein of unknown function (DUF1635) 17 213 IPR012862 -
Amo13g0436 376 MobiDBLite consensus disorder prediction 257 300 - -
Amo13g0436 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 374 IPR013083 -
Amo13g0436 376 CDD RING-H2_PA-TM-RING 326 369 - -
Amo13g0436 376 Coils Coil 15 63 - -
Amo13g0436 376 Pfam Ring finger domain 326 369 IPR001841 -
Amo13g0436 376 SUPERFAMILY RING/U-box 320 374 - -
Amo13g0436 376 SMART ring_2 327 368 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0436 Amo-Chr13 5693970 5696695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0436 290 370 C3H Transcription Factor Family AT2G27940 49.383 2.11e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0436 - - adu:107476879 482.256