Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0409 ATGGAGGACGGAGGGAGTTCAAGGTGGAACCCTACGAAGGAGCAGATAAGCATGTTGGAGAATCTTTATAAGCAGGGAATAAGAACCCCAAGCGCTGAAGAGATTCAGCAAATAACAGCCAGGTTGAGAGCCTATGGTCACATCGAAGGCAAGAACGTCTTCTACTGGTTTCAGAATCACAAAGCCAGACAGAGGCAGAAGCAGAAGCAACACACTCTTGCTTACTTCAATCGCTCTTTTCTCCATCATCATCATCATCAACCTGCAGGTATGATGAGGAGAATCCCCGATAATAATCATAGTGAAGAAGAAACAATGTTTGATTATGATGATGATGATAAGCAACAAGATAGAACGTTGGATCTTTTCCCTCTTCACCCAACTGGCATCTTGGAAGGGAAGAAGGAAACACAAGATAACAACAACAACAACAACATGATGACCATGATGTGCTCTTTCATGGCGCCTTCTTCTTCATCATCGTCATCACTTTCCACTGATGATGGACATGGCTATAGGCACCAACAACAACAACAACTACCCTTCTTTGATTTCTTCGTCACTTCTGGACATGGACAAGGATCCTAA 588 0.4337 MEDGGSSRWNPTKEQISMLENLYKQGIRTPSAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQHTLAYFNRSFLHHHHHQPAGMMRRIPDNNHSEEETMFDYDDDDKQQDRTLDLFPLHPTGILEGKKETQDNNNNNNMMTMMCSFMAPSSSSSSSLSTDDGHGYRHQQQQQLPFFDFFVTSGHGQGS* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0409 195 Pfam Homeodomain 7 66 IPR001356 GO:0003677
Amo13g0409 195 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 102 191 IPR044555 GO:0003700|GO:0099402
Amo13g0409 195 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 4 88 IPR044555 GO:0003700|GO:0099402
Amo13g0409 195 CDD homeodomain 8 68 IPR001356 GO:0003677
Amo13g0409 195 SUPERFAMILY Homeodomain-like 4 73 IPR009057 -
Amo13g0409 195 MobiDBLite consensus disorder prediction 153 174 - -
Amo13g0409 195 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 4 88 - -
Amo13g0409 195 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 102 191 - -
Amo13g0409 195 SMART HOX_1 4 71 IPR001356 GO:0003677
Amo13g0409 195 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Amo13g0409 195 Gene3D - 8 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0409 Amo-Chr13 5453727 5454424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0409 6 82 Wox Gene Family AT5G59340 84.416 5.60e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Amo13g0409 Homeodomain 2.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0409 - - aip:107634108 360.533