Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0403 ATGGAGCTGTTGCACCCTCTTCCTCCTCACCACCACGACCCGCCACTCGCAGCAGACGCCCTCCACCGCTACTCTCCTCCTCCCTCCACGAGCTCGCGCATTGAGTTCCACGCGCTGGCAACCCCTCCTGAAGCCGCCGCTGAAGAGGACAAGGTGCACGTGGCAGTTGGCAAGTCGGTGGGAAAAGGTGCCACTTTGCTTCAATGGGCTTTCTCAAACTTCACCAACCCACACATTCTTTTGCTTCATGTTCATCAACCTTCTCCTTTCATCCCTACACTATTAGGGAAGTTACCAGCATCTCAGGCTAATCCTGAAGTGGTCTCTGCTTTTAGAAGAGAGGAAAAAGAACAGGCCATGAGGCTTTTGGACAATTACTTGAGAATTTGCCGTGCAGCTAAGGTTAAGGCAAGCTTTATGATGACGGAAGCTGATCAAGTCCAGAAAGGGATTGTTGATTTGGTTGTAGGGCATAATATTAGGAGGCTTGTTATTGGAGCAATACCCGAAGGTTGGATGAAAGTCAAAAGGAATTCCAGGAAAGCAAATTATGCTGCCAAAAATGCACCCTCCTTCTGTAAAATATGGTTTATCTATAGAGGTAAACATATTTGGACAAGAGAAGCTTCTGAAAAACCTTGTTCTTTATCACCTTGTGAAACAATTGAAACAGAAGGCACTTTTGCCGCCGAATCAACTACATCCAGCGGTCCATTGCCCCAAAATTCTGCTGAGAGTTCTTCAGATACTCATTTAGAGGCTGAAGAAGAAAGAGTTAATAGTCAACTTGTTGAAGTCAAACAAGAAGCTGATGAAGCAGCAGATGAGTCTTTTGTTGAGCTATTGAAGTTGGAAGCTGAAGCCACTGAGGCCATAAGGAAGGTCAATTTGTTTGAATCTGCTCATGCACAGGAAGTAAAGCTCAGACAAGAGGCAGAGGATGAGTTGAGAACCACAGTAAAGGATCAACAAAAGCTCTTGGATGAGAATGAAGAAATTGGTAGTGAGTTACAAAGAACCATGAGAAGTATTGCCATCCTAAACAGTTGTGTGCAGGAAACAGACCATAGGCGAGATGCTGCTGAAGATGAACTATCACTAATTCAAGCATCCATCTCCACACTCTGGCACGAAAAACAGCAGATCAGGCGACAGAAAATGGAAGCCATCCGCTGGCTGGACCGGTGGAAAAGCCGTGGGCAAGTTGGAGTTGCTCATTGTAATGGAGTTGTAGGATTTGCTGAGGAGTTACCTGAGATAGCAGAATTTTCATTATTGGATATTCAAAATGCCACATGCAATTTTTCTGAAAGCTTTAAAATTAAGGAGGGTGGATATGGCGCTATTTATAAGGGAGAAATGTTGGGTAGGACAGTTGCTATAAGAAAGCTCCATTCTCACAATTTGCAAGCACCTTCACAGTTTCACCAAGAGGTTCAAGTTCTTGGTAGTTTTCAGCACCCTCATCTGTTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCACTTGTATATGAGTACTTGCCCAATGGAAGTATTCAAGACAGCCTTCTAAGAAGGAGCAACATTTCCCCTTTAACATGGAATATCCGAACACGATGGATTGCTGAAATTGCTAGTGCTATCTGCTTTTTACATTCTTCCAAACCGGAAACTATTATTCATGGTGATCTGAATCTTGACATCATACTTCTTGATTCTGCACTTAGTTGCAAGATTTGTGAATTTGGGTTCAGCAGATTGGTGACAGAAGATTCTCTCTATCTTCCTAGTTTTGGCTTGGAAACTGAGCCAAGGGGTTCTTTCACATATACAGATCCAGAGTTTCAGAGAACTGGACTAACACCAAAGTCTGACATATACTCCTTTGGCCTCATTATTTTGCAACTCTTGACTGGTCGGACTCCAGTTGGATTAGTTGGTGAAGTACAGAAAGCCGTTACATATGGACGATTGTCCTCAATTTTAGATTCTTCGGTTGGCGAATGGCCTTTGGCTGTGGCAACACGATTGGCTGACCTCGGATTACAGTGCTGCCAACAATATAGTAGAGACAGACCAGAGTTAACACCGTCTCTGGTTAGAGAACTGGAGCAGTTACATGTTTCGGAAGAGCGACCTGTGCCGTCATTTTTCCTGTGCCCAATCCTTCAGGAAATAATGCATGATCCCCAAGTTGCAGCAGATGGATTTACTTATGAAAGGGATGCCATAACTGAATGGCTGGAAAATGGACATGAAACTTCTCCCATGACCAATCTGAAACTGAATCATCTGTATCTTACTCCCAATCATGCACTTCGACTTGCTATCCAAGAATGGCTTTGCAAACCCTGA 2337 0.4407 MELLHPLPPHHHDPPLAADALHRYSPPPSTSSRIEFHALATPPEAAAEEDKVHVAVGKSVGKGATLLQWAFSNFTNPHILLLHVHQPSPFIPTLLGKLPASQANPEVVSAFRREEKEQAMRLLDNYLRICRAAKVKASFMMTEADQVQKGIVDLVVGHNIRRLVIGAIPEGWMKVKRNSRKANYAAKNAPSFCKIWFIYRGKHIWTREASEKPCSLSPCETIETEGTFAAESTTSSGPLPQNSAESSSDTHLEAEEERVNSQLVEVKQEADEAADESFVELLKLEAEATEAIRKVNLFESAHAQEVKLRQEAEDELRTTVKDQQKLLDENEEIGSELQRTMRSIAILNSCVQETDHRRDAAEDELSLIQASISTLWHEKQQIRRQKMEAIRWLDRWKSRGQVGVAHCNGVVGFAEELPEIAEFSLLDIQNATCNFSESFKIKEGGYGAIYKGEMLGRTVAIRKLHSHNLQAPSQFHQEVQVLGSFQHPHLLTLLGVCPEAWSLVYEYLPNGSIQDSLLRRSNISPLTWNIRTRWIAEIASAICFLHSSKPETIIHGDLNLDIILLDSALSCKICEFGFSRLVTEDSLYLPSFGLETEPRGSFTYTDPEFQRTGLTPKSDIYSFGLIILQLLTGRTPVGLVGEVQKAVTYGRLSSILDSSVGEWPLAVATRLADLGLQCCQQYSRDRPELTPSLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQVAADGFTYERDAITEWLENGHETSPMTNLKLNHLYLTPNHALRLAIQEWLCKP* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0403 778 Gene3D Phosphorylase Kinase; domain 1 412 507 - -
Amo13g0403 778 CDD STK_N 51 201 - -
Amo13g0403 778 Gene3D Transferase(Phosphotransferase) domain 1 508 707 - -
Amo13g0403 778 Pfam U-box domain 708 777 IPR003613 GO:0004842|GO:0016567
Amo13g0403 778 MobiDBLite consensus disorder prediction 229 260 - -
Amo13g0403 778 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 64 172 - -
Amo13g0403 778 PANTHER OS02G0152300 PROTEIN 40 225 - -
Amo13g0403 778 PANTHER OS02G0152300 PROTEIN 241 777 - -
Amo13g0403 778 Gene3D HUPs 45 174 IPR014729 -
Amo13g0403 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 708 777 IPR013083 -
Amo13g0403 778 Pfam Protein tyrosine and serine/threonine kinase 440 690 IPR001245 GO:0004672|GO:0006468
Amo13g0403 778 ProSiteProfiles Protein kinase domain profile. 435 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0403 778 ProSiteProfiles U-box domain profile. 707 778 IPR003613 GO:0004842|GO:0016567
Amo13g0403 778 CDD RING-Ubox_WDSUB1_like 712 753 - -
Amo13g0403 778 SMART Ubox_2 711 774 IPR003613 GO:0004842|GO:0016567
Amo13g0403 778 MobiDBLite consensus disorder prediction 229 248 - -
Amo13g0403 778 SUPERFAMILY RING/U-box 705 777 - -
Amo13g0403 778 Coils Coil 252 276 - -
Amo13g0403 778 PANTHER OS10G0100500 PROTEIN 241 777 - -
Amo13g0403 778 PANTHER OS10G0100500 PROTEIN 40 225 - -
Amo13g0403 778 Coils Coil 309 329 - -
Amo13g0403 778 SUPERFAMILY Protein kinase-like (PK-like) 419 690 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0403 Amo-Chr13 5379029 5383690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0403 49 775 U-box Gene Family AT2G45910 36.398 2.71e-163 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Amo13g0403 PK_Tyr_Ser-Thr 3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0403 - - aip:107629106 1248.8