Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0401 ATGGGAAACGGCATAGGGAAGCTGACGGTGTGCTTCACCGGAAGCGGCGGAGGTGGAGGGCGCCGCCGCAAGCACGACATATCCATCGTATTAACAGAGCCACTAGACGAGGGTCTGGGACACTCGTTCTGCTATGTTAGGCCCGACCCGACCCGAATATCATCTTCGAAGGTTCACTCGGAAGAAACCACCACTTTCAGAACAATCTCCGGCGCGTCCGTGAGCGCCAACACATCGACGCCACTCTCAACTTCCTTTGTGGATCTCTACTCATACGGTTGCATCGATAGAGCTGCGGCTTTCGAGAGCTCAACCTCTTTCGCCGCGCTTCCTCTTCAACCCATTCCAAAGGGCTTCACCAATTCGGGTCCATTTTCCGGTAACTTAAACGGGTTTCCAGCATCGGGTCCTCTCGAGAGAGGCTTCATGTCAGGCCCGATTGAGCGTGGATTTATGTCGGGCCCAATCGACCGGGCCGGGATCTTCTCCGGCCCGATGGATAGAGACAGTTCCGATCAGTTTCAGAGAAGCTTCTCTCATGGCGGTTTGATTTCGGGTATTGGGATTCGACCCGGAACGAGGAAGACCCGGTGGATTCGGGTGCTGCGGAGGGCGATTTCGAAGACCCTTCGGCAAGGTTCGATCGTGGCTCCGATCAAAGGGGTGGCGCCGGCGGGAAGGGAGCCACCGGAGTGGGTTATTGCGGCAGCGGAGAAGCAGAACGAGAACACGGTTAACAGCGTGAATTTCAGCAGCGAAGGGAGCTTCTTGGAGGACGATGATTCAACGACGGCGGCGATGGAAGGTCACCAGAACGTTCAGTGGTGTCAGGGAAAAGCAGGGGAGGACCGTGTCCACGTGGTGGTGTCGGAGGAACACGGTTGGGTGTTCGTGGGGATCTATGATGGATTCAACGGCCCAGATGCACCTGATTACTTGCTTTCGAATCTGTACAACGCAGTGCACAAGGAGCTCAAGGGTTTGCTTTGGGATGATGGGGTTGATGGGAATTCCAATTTGGGGGTTAAAGATTCGATCTTGACAACTGGGGATGATGATGGCGATGCTTGTGCTGGCTGTGTTGATCAACAGAATAATAATAATATGAATGACGAAGATGGGTCATCTTGTGCTGCAAGTGGTGCTGGGGATTCTAATTTTGATGATCATGGTTTGAAGAGAAAAAAGCGTGGTGGAAATGGAAATGGAAGTGGAAGGAGTTGTAAGAACAAGTACAGAGGCGCTGCAAAGAAATGGGAGGAGAATCAGATGAGGTGGAAGTGCGAGTGGGACAGGGAAAGAGTGGAACTTGATCGGAGATTGAAGGAGCAGCTAACTGGATCCGATGGGTCCATGATGGTGAACCATTCCGATGTGTTGGAAGCTCTGTCACGGGCTCTTAGGAAGACGGAGGAGGCTTTCTTGGACGTGGCGGATAACATGGTGATGGAGAATCCTGAGCTTGCTCTAATGGGGTCTTGTGTTCTTGTGATGTTGATGAAAGGTGAAGATGTTTATGTGATGAATGTTGGAGATAGTAGAGCTGTTCTTGCTCAGAAGGCTGAGCCTGATTACTGGCTTGGCAAGATTAGGCAGGACTTGGAGAGGATCAATGAGGAGACCATGAATGATCTCGAGTCCTGGGATGTCGATCGATCCACCTTGGTCCCTACTCTCACCTCCATTCAGCTCACCAAGGATCACAGCACCAACGTTGATGAGGAAATCCAAAGAATAAGAAAAGAGCACCCGGATGATCCCTTCGCGCTTGTAAATGAGCGCGTCAAGGGATCTCTCAAGGTTACTCGGGCATTTGGTGCCGGATTTCTCAAACAGCCCAAGTGGAACAATGCATTGTTGGAGATGTTTAGAATAGACTATGTGGGAAGTTGTCCTTACATAAGTTGCATGCCATATCTAAAACACCATAGATTAGGACCAAAGGACAAGTTTTTGATTCTATGTTCAGATGGCTTGTACCAATACTTGTCAAACGAAGAAGCAGTTGCCGAAGTTGAACTTTTCATCACATTGCAACCTGAAGGAGACCCTGCTCAGCATTTGGTTGAGGAAGTCCTATTTCGTGCTGCAAAGAAAGCTGGTTTGGACTTTCACCAATTGCTTGAAATTCCACAAGGTGATAGACGTCGATACCATGATGATGTCTCCATCATTGTTATTTCTTTGGAAGGAAGGATATGGAGATCATGGGTATAA 2217 0.5007 MGNGIGKLTVCFTGSGGGGGRRRKHDISIVLTEPLDEGLGHSFCYVRPDPTRISSSKVHSEETTTFRTISGASVSANTSTPLSTSFVDLYSYGCIDRAAAFESSTSFAALPLQPIPKGFTNSGPFSGNLNGFPASGPLERGFMSGPIERGFMSGPIDRAGIFSGPMDRDSSDQFQRSFSHGGLISGIGIRPGTRKTRWIRVLRRAISKTLRQGSIVAPIKGVAPAGREPPEWVIAAAEKQNENTVNSVNFSSEGSFLEDDDSTTAAMEGHQNVQWCQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYNAVHKELKGLLWDDGVDGNSNLGVKDSILTTGDDDGDACAGCVDQQNNNNMNDEDGSSCAASGAGDSNFDDHGLKRKKRGGNGNGSGRSCKNKYRGAAKKWEENQMRWKCEWDRERVELDRRLKEQLTGSDGSMMVNHSDVLEALSRALRKTEEAFLDVADNMVMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEETMNDLESWDVDRSTLVPTLTSIQLTKDHSTNVDEEIQRIRKEHPDDPFALVNERVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGSCPYISCMPYLKHHRLGPKDKFLILCSDGLYQYLSNEEAVAEVELFITLQPEGDPAQHLVEEVLFRAAKKAGLDFHQLLEIPQGDRRRYHDDVSIIVISLEGRIWRSWV* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0401 738 Coils Coil 453 473 - -
Amo13g0401 738 SMART PP2C_4 264 727 IPR001932 -
Amo13g0401 738 Pfam Protein phosphatase 2C 458 685 IPR001932 -
Amo13g0401 738 PANTHER PROTEIN PHOSPHATASE 2C 19 738 IPR015655 GO:0004722|GO:0006470
Amo13g0401 738 MobiDBLite consensus disorder prediction 388 410 - -
Amo13g0401 738 PANTHER - 19 738 - -
Amo13g0401 738 SUPERFAMILY PP2C-like 278 730 IPR036457 -
Amo13g0401 738 Gene3D - 237 734 IPR036457 -
Amo13g0401 738 ProSiteProfiles PPM-type phosphatase domain profile. 264 729 IPR001932 -
Amo13g0401 738 CDD PP2Cc 436 729 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0401 Amo-Chr13 5369697 5372978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0401 1 738 PP2C-type Phosphatase Gene Family AT1G07630 64.495 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0401 - - aip:107629103 1438.32