Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0399 ATGGGAATTTGTTTGAGCAACCAAATTAAAGCTGAGACCCCATATAACACTGGGTTAAGTTCAAAGAATGTTGGTACCCATAGAAATGATCTCAGCAACCAAAATAGTAAGGTGTCAACGGTTTCAATGCCTCAAAATCCACGAACTGAGGGTGAGATCTTGCAGTCACCGAATCTAAAGAGCTTTACTTTGATAGAACTTAAGGCTGCAACAAGAAATTTTCGTCCGGACAGCGTCTTGGGAGAAGGTGGATTTGGATCAGTTTTTAAGGGATGGATTGATGAGCAGACATTTGCAGCTGCTAAACCTGGCACTGGCATTGTTATTGCTGTGAAGAAACTTAATCAGGATGGTTTCCAAGGTCACAAGGAGTGGTTGGCTGAAGTGAACTATCTAGGCCAGCTTTCTCATCCCCATCTGGTGAAATTGATTGGGTATTGTCTTGAAGATGAACACCGCCTTCTGGTCTACGAATTCATGCCTCGTGGAAGCTTGGAGAATCATTTGTTCAGGAGAGGCTCATATTTTCAACCTCTTTCGTGGTGCCTTCGCTTGAAGGTTGCTCTTGGTGCTGCAAAAGGGCTTGCATTTCTTCATAGTGCCGAAACAAAAGTCATATATAGGGACTTCAAGACTTCAAATGTGTTGCTTGATTCAAATTATAATGCAAAACTTTCTGATTTCGGTTTGGCGAAGGATGGCCCTACCGGTGACAAAAGTCATGTCTCCACAAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCAACTGGTATTGTGGGATTAATGATCATTAATGCATCCAAGATTAAGCTTAATAGCATTTTGTTTAATGGACATTCACTTTTTTCTGTAGGTCATCTCACTGCTAAGAGTGATGTCTTTAGTTTTGGAGTTGTCCTATTGGAAATGTTATCAGGTCGGAGGGCTGTTGATAAGAACCGTCCTTCTGGACAGCACAACTTGGTGGAATGGGCGAAACCATACCTTGCGAACAAGCGCAAGGTTCATCGAGTGATGGATAACCGTCTAGAAGGCCAATACTCTCCAGATGAGGCCTTTAAGGTAGCTGTCCTTGCACTAAGGTGCCTAGCACCAGAGTCCAAGTTGAGGCCAAGCATGGATGAAGTTGTTAGCAGTTTGGAGCAGCTTCAGATTGTCAATGTAAATCAGAATCGTCCTGGCAATGGCCATAGAGTTCGCAGAAGAAGCGCCGATGATGCTAAACCTGTGAGAATTAGCACGGCATATCCTCGGCCATCTGCAACTGCACTCTGCACTTGA 1293 0.4385 MGICLSNQIKAETPYNTGLSSKNVGTHRNDLSNQNSKVSTVSMPQNPRTEGEILQSPNLKSFTLIELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTFAAAKPGTGIVIAVKKLNQDGFQGHKEWLAEVNYLGQLSHPHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWCLRLKVALGAAKGLAFLHSAETKVIYRDFKTSNVLLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGIVGLMIINASKIKLNSILFNGHSLFSVGHLTAKSDVFSFGVVLLEMLSGRRAVDKNRPSGQHNLVEWAKPYLANKRKVHRVMDNRLEGQYSPDEAFKVAVLALRCLAPESKLRPSMDEVVSSLEQLQIVNVNQNRPGNGHRVRRRSADDAKPVRISTAYPRPSATALCT* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0399 430 MobiDBLite consensus disorder prediction 20 51 - -
Amo13g0399 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Amo13g0399 430 PANTHER OS01G0588500 PROTEIN-RELATED 25 262 - -
Amo13g0399 430 Pfam Protein tyrosine and serine/threonine kinase 78 384 IPR001245 GO:0004672|GO:0006468
Amo13g0399 430 Gene3D Transferase(Phosphotransferase) domain 1 160 404 - -
Amo13g0399 430 ProSitePatterns Protein kinases ATP-binding region signature. 80 113 IPR017441 GO:0005524
Amo13g0399 430 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 287 404 - -
Amo13g0399 430 SUPERFAMILY Protein kinase-like (PK-like) 51 386 IPR011009 -
Amo13g0399 430 MobiDBLite consensus disorder prediction 394 416 - -
Amo13g0399 430 CDD STKc_IRAK 80 387 - -
Amo13g0399 430 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Amo13g0399 430 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 25 262 - -
Amo13g0399 430 PANTHER OS01G0588500 PROTEIN-RELATED 287 404 - -
Amo13g0399 430 ProSiteProfiles Protein kinase domain profile. 74 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0399 Amo-Chr13 5336942 5340257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0399 44 384 Glycoside Hydrolase AT3G07070 45.609 6.93e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo13g0399 PK_Tyr_Ser-Thr 2.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0399 - - qsu:111987244 633.254