Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0398 ATGAAGTGCTTCCACTTCCCAAGCATCGAAAGAGACCACCGGCGAGACTACGACAACGAAGACGGCGTCGTTTCAAGTAGCTGCAGAACCTCAAGGGTCTCATGGGCCCGCTCCCTCAGCGTCGCTTCCTCAACCCTCGTTCGCAACTCCGAGTTCGACGACACCGACTCTTCCTTCAACGACACCCTCGCTTTCCATGACTTCCTCTCTCTTCGCCGCGCCAACAACCTCCTTCTCTTCTCATTCTCTCAGCTCAAAACCGCCACTCGCGGATTCAGCAGGGCCCTCTTGATCGGCGAGGGTGGCTTCGGCCCTGTCTACAGGGGGACCCTTTCTGTTCCCGATGACGGTGACGGTGACGGTGACGGTCTTTCAGAGGTTCAGATGGAGGTTGCAATTAAGCAGCTGAATCGTAACGGCCACCAGGGGCATAAAGAGTGGATTAATGAAGTGAACTTGTTGGGTGTGATCAAGCATCCGAATCTCGTGAGGTTGGTGGGGTATTGTGCAGAGGATGATGAAAGAGGGATTCAAAGACTTCTTGTGTATGAACTTATGCCTAATAAGAGCTTGGAAGACCATCTTCTGGCTCGAGTCTCATCAATGTCAACACTACCATGGACCACGAGATTAAAAATTGCTCAAGATGCAGCTCGCGGTTTGGCATACCTTCATGAAGAAATGGATTTTCAGCTAATATTTCGAGATTTTAAGACTTCCAACATTTTGCTGGATGAGGACTTCAATGCAAAGCTTTCTGATTTTGGACTTGCTAGGCAAGGTCCCTCGGAAGGGCTGGGCTATGTTTCAACAGCAGTTGTTGGTACCATAGGTTATGCTGCACCAGAGTATGTTCAGACTGGTAAGCTGACTGCTAAGAGTGATGTATGGAGCTTCGGTGTAGTTCTTTACGAGCTTATCACTGGTAGGAGAGCTGTAGAACGGAACCTACCCAGAAATGAACAGAGGCTCTTGGAGTGGGTAAGACCTTATGTTTCTGATCCTAGGAAGTTCCATGTTATAGTAGACCCAAAACTTGAAGGACAATATTGCATGAAATCAGCTCAAAAGCTTGCTACTCTAGCAAACAAGTGCCTCATGAAGCAGCCTAAGTCACGTCCGAAAATGAGTGACGTGGTTGAGTTTCTCGCAAACATTCTCAACGATACTATTCAGGAAGAAAGCATCCCTCAAGCTGTTGTAGCCAACGGAGAAGAGAAAGTGAAGCCATCATCTGTCAAGGACATAGAACCTGAACCAGCTGCTAAGCAAGGGAACAATTATCTGAAGAAGGTTTTTGAGTTTAGAGACATGGTGAGCTTAAGAAACAAGTCCATTGGAAGGTTAGATTGGAAAAATTGGGCACCTGGGCTTGTAAGAACTTGGTGA 1389 0.4766 MKCFHFPSIERDHRRDYDNEDGVVSSSCRTSRVSWARSLSVASSTLVRNSEFDDTDSSFNDTLAFHDFLSLRRANNLLLFSFSQLKTATRGFSRALLIGEGGFGPVYRGTLSVPDDGDGDGDGLSEVQMEVAIKQLNRNGHQGHKEWINEVNLLGVIKHPNLVRLVGYCAEDDERGIQRLLVYELMPNKSLEDHLLARVSSMSTLPWTTRLKIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDEDFNAKLSDFGLARQGPSEGLGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVERNLPRNEQRLLEWVRPYVSDPRKFHVIVDPKLEGQYCMKSAQKLATLANKCLMKQPKSRPKMSDVVEFLANILNDTIQEESIPQAVVANGEEKVKPSSVKDIEPEPAAKQGNNYLKKVFEFRDMVSLRNKSIGRLDWKNWAPGLVRTW* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0398 462 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 36 398 - -
Amo13g0398 462 SUPERFAMILY Protein kinase-like (PK-like) 73 383 IPR011009 -
Amo13g0398 462 PANTHER OS01G0588500 PROTEIN-RELATED 36 398 - -
Amo13g0398 462 Gene3D Phosphorylase Kinase; domain 1 62 185 - -
Amo13g0398 462 Pfam Protein tyrosine and serine/threonine kinase 98 383 IPR001245 GO:0004672|GO:0006468
Amo13g0398 462 CDD STKc_IRAK 98 386 - -
Amo13g0398 462 Gene3D Transferase(Phosphotransferase) domain 1 186 406 - -
Amo13g0398 462 ProSiteProfiles Protein kinase domain profile. 92 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0398 Amo-Chr13 5333797 5336822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0398 80 435 Glycoside Hydrolase AT3G07070 45.225 3.06e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo13g0398 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0398 - - gmx:100305425 677.937