Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0388 ATGGAAGACGTGTATTATTCGGCATTGATTTGCCAACAGAGAGATGAAGAATTGAGGCAGAAGCTTGAGGATGCAAAACATGAAATTGAAATCTTGAAGAATGTGAAGTTGGAACTCTTGAATATGTTGAACATGGCATACCAAGAGAGGGATGAAGCAAAGTTTCAACTACAGAAACTAATTAACAATTTCATGCCATTTGATGCCAATAATAACAATTATTCTTATTCAAGCATCACAGAATCCAAGAGTGTGTCACATGATTCACTAGATTCTCCTTTCTTTGACACTGTATCTTCTCCTGAATTCTCAAACATCAACAATGTAGTTGTTGATTCTTCCAACAACAACAACAACATGGGGCATTATCTATATCAGAACATGGTTCAAGTTCAAGACAGGAATTTCTCAAAACATGATCCTGCTGCTGAGATTATTGATTTTCTTGCCAAAGGTAGAGTCTTGCCTCAAAAGGGTAAGCTCCTTGAAGCTGTGCAAGAATCTGGTCCATTGCTTCATACCCTTCTCCTTGCAGGGCCACTTCCTAATTGGAGAAACCCTCCACCATTGCAACAAATCAATGTTCCACACTTAACCATCAATGAGGATTATTCTGTCAATTCTAATTCCTTTGTAGAACATGGGAATTCTTTATTGCTGCAGCCAAAGCTCCTTCCATCATCACAATCCTTAGTGTGTTCTTCGAATCCTCTATCGGTGTGTTCGGCTTTTATGCTCAACTTTGATGGCGCTGCTGGATCATCATCATCATCATGGAACAATGCACGGCAATTGAGTTCATCAAGTCCTAGTGTTAGGAACCATGCTCATAGGGGACATGGAGATGAATTAGATATTGAAGATCCTTCTTCTCCACAGTTTCAAAACAGTGGTTTGGAATCTTCGGCTGTTGGCTCTCTTCCAATGCACCAGTTCAAGGTAAATGAAGGAGGAGAACACAAGCAGATTAACACAGACTGTGCCATTTGTCTTGGCGAGTTCGAAGAAGGGGAGTGGTTGAAACATCTTCCAAATTGCTCCCATGGCTTCCATGTTCGGTGCGTGGACGAGTGGTTTCGGTCTCATTCAAGTTGTCCTCTCTGTAGAACCTCTCTCTCTGTTATGTCCTAA 1131 0.4103 MEDVYYSALICQQRDEELRQKLEDAKHEIEILKNVKLELLNMLNMAYQERDEAKFQLQKLINNFMPFDANNNNYSYSSITESKSVSHDSLDSPFFDTVSSPEFSNINNVVVDSSNNNNNMGHYLYQNMVQVQDRNFSKHDPAAEIIDFLAKGRVLPQKGKLLEAVQESGPLLHTLLLAGPLPNWRNPPPLQQINVPHLTINEDYSVNSNSFVEHGNSLLLQPKLLPSSQSLVCSSNPLSVCSAFMLNFDGAAGSSSSSWNNARQLSSSSPSVRNHAHRGHGDELDIEDPSSPQFQNSGLESSAVGSLPMHQFKVNEGGEHKQINTDCAICLGEFEEGEWLKHLPNCSHGFHVRCVDEWFRSHSSCPLCRTSLSVMS* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0388 376 SUPERFAMILY RING/U-box 320 374 - -
Amo13g0388 376 MobiDBLite consensus disorder prediction 259 274 - -
Amo13g0388 376 PANTHER ENABLED-LIKE PROTEIN (DUF1635) 1 359 IPR012862 -
Amo13g0388 376 Pfam Protein of unknown function (DUF1635) 17 213 IPR012862 -
Amo13g0388 376 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 359 - -
Amo13g0388 376 Pfam Ring finger domain 326 369 IPR001841 -
Amo13g0388 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 374 IPR013083 -
Amo13g0388 376 ProSiteProfiles Zinc finger RING-type profile. 327 369 IPR001841 -
Amo13g0388 376 CDD RING-H2_PA-TM-RING 326 369 - -
Amo13g0388 376 MobiDBLite consensus disorder prediction 259 300 - -
Amo13g0388 376 Coils Coil 15 63 - -
Amo13g0388 376 SMART ring_2 327 368 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0388 Amo-Chr13 5223584 5226294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0388 290 370 C3H Transcription Factor Family AT2G27940 49.383 3.64e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0388 - - adu:107476879 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0195 18 2811288 2814030 Amo13g0388 13 5223584 5226294 PCT
Amo08g1039 08 17706933 17709309 Amo13g0388 13 5223584 5226294 PCT
Amo13g0388 13 5223584 5226294 Amo18g0195 18 2811288 2814030 PCT
Amo13g0388 13 5223584 5226294 Amo08g1039 08 17706933 17709309 PCT