Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0370 ATGATGTGGAGTTTTAGAGAACTTGGTTTATTAACATGTGCCTTGTCAATCTTGCCCTTATTTTGTTCTGCTGGAAAGTTTGTGCCTATAGATAATTACCTTATAGACTGTGGATCACCTTCCAATACTACAGTAGGTAGTCGAAATTTCGCAGCAGATAGCTTTTTTAAGAATTTGGTTTCCACCAATCAAGACATTCTTGCTAATACCTTGAATTTAAATGGTGATTCCCCTCTCTATAGGACGGCGAGGATTTTCGTCGGATCCTCTGAGTACACGTTCCCTATTAACCAAAAGGGGAGACATTGGATCAGGCTTTATTTCTTTCCATTTGATTTTGGAAAGTACAAATTGAGTACTGCAAATTTTGCTGTTATCGGACAAGATACTATACTTCTTGGTAACTTCAGTGTCCAGAAGAATCCTGTTATGAAGGAGTTCTCTTTGAATGTGAGCTCAGACACATTTGTGATCACTTTCATGCCATCAAACAACTCAATAGCCTTTGTCAATGCAATTGAAGTTGTTTCAGTTCCAGATGACCTCATTGTTGATGATGCTTACACCTTAAAACCATCATTAGCACCTTATTATGGGTTGTATTCACAAGCATTAGAGACTGTTTACAGGGTTAACATGGGTGGTCCCAAAGTCTCTGCCGACAATGACACCCTTCAACGAATTTGGGTTCCGGATCAGAGCTTCCTTATAAACTCAAACCTTGCAACTAGTAATTCAAACATTGCTGCTGTTAAGTACACGGAAGGTGGGCCAACCGAAAACACTGCTCCACCAGTTGTCTATGGTACTCTTAGACAGATGAATTCGATGTACGATCCCCGGTTTATTTTCAATGTGACATGGCAGTTTGATGTGGATCCTGGATTTGAGTACTTTCTTAGGCTTCATTTCTGTGATGTAATCAGTAGAAGTCTTAATGAACTCTATTTCAATGTTTACATTGACTCTTCTTATGCTGCCAAGGATCTTGATCTCAGTACAGAAACTAATAATGTTTTGGCTGCTCCATATTTTAAGGATTTGGTTACTCTCCCAACTGTTAGCAACCGAATTCGTGTGAGTATCGGTCCATCACTGACAAATACAGAGTATCCTAATGCCATATTGAATGGGCTGGAAATCATGAAAATGAACAACTCTATGAACAGTCTTAGTACAGCTACAATGGTGCCTGTAACAAGTGGTTCTGGTTCGAATTCTAAGAAAGTTGGGGTGATAGTTGGTTCGATTCTCGGGGCATGTAGTGTGATTGTCTTGATTGGAGTTTTATTTGTAATATACATGAAAAGGAGGAAGTTGGCACAGCAAAGACATTCAAAAACATGGATTCCAATATCTGCCAATGATGGAACTTCTCACACCATAGGAAGTAAATATTCTAATGCCACAACAGCAAGTGCTGCCACAAATTGTGGCTACCGCATTCCTTTCTTGGCTGTTCAGGAAGCTACAAATAGTTTTGATGAGAATTTGGTTATCGGCATAGGTGGTTTTGGCAAAGTATACAAGGGAGAATTGAGTGATGGAACTAAAGTTGCAGTTAAGAGAGGGAATCCTCGGTCGCAACAGGGTGTAGCCGAGTTTAGGACTGAAATCGAAATGTTGTCTCAATTCAGGCATCGACATTTGGTGTCACTGATTGGATATTGTGATGAAATGAATGAAATGATATTGATTTATGAATATATGGAGAAGGGAACTCTTAAGAGTCATTTATATGGTTCCGGTCTTCCAAGCTTGAGTTGGAAAGAGAGGCTTGAGATATGCATAGGAGCTGCTCGGGGACTTCATTATCTTCATACAGGCTATGCAAAGGCGGTAATTCACCGCGATGTGAAGTCTGCAAACATCCTACTTGATGAGAACCTTATGGCGAAAGTAGCAGATTTTGGGCTATCAAAAACTGGTCCGGAAATTGACCAGACTCATGTTAGCACAGCTGTCAAGGGGAGCTTTGGATACCTTGATCCGGAGTATTTCCGAAGACAACAACTAACTGAGAAGTCAGATGTATATTCATTTGGGGTGGTACTCTTTGAAGTTCTTTGTGCAAGACCGGTCATAGACCCTTCGCTGTCGAGGGAAATGGTGAACTTGGCAGAATGGGCATTGAAGTGGCAGAAAAAAGGTCAGTTGGAACAGATCATAGATCCTACATTGACTGGTAAAATAAGACCAGATTCTCTCAGGAAGTTTGGCGAAACAGCCGAGAAATGCCTAGCTGAATTCGGTGTTGATAGGCCTTCTATAGGAGATGTCCTGTGGAATCTAGAGTATGCTCTCCAACTTCAGGAGGCTGTTTTTCAAGGTGATCCGGAAGAAAATAGCACCAATATGATCGGTGATCTCTCGCCCCAGATCAACAATTTTAGCCGCGAAGAAAGCGTTTCGGCCGCCCAATTTGAATTTCCAAGCCTTAATGATCTTTCTGGTGTTTCTATGAGTAAGGTGTTCTCACAGCTGGTGAAATCTGAAGGGAGATGA 2505 0.4108 MMWSFRELGLLTCALSILPLFCSAGKFVPIDNYLIDCGSPSNTTVGSRNFAADSFFKNLVSTNQDILANTLNLNGDSPLYRTARIFVGSSEYTFPINQKGRHWIRLYFFPFDFGKYKLSTANFAVIGQDTILLGNFSVQKNPVMKEFSLNVSSDTFVITFMPSNNSIAFVNAIEVVSVPDDLIVDDAYTLKPSLAPYYGLYSQALETVYRVNMGGPKVSADNDTLQRIWVPDQSFLINSNLATSNSNIAAVKYTEGGPTENTAPPVVYGTLRQMNSMYDPRFIFNVTWQFDVDPGFEYFLRLHFCDVISRSLNELYFNVYIDSSYAAKDLDLSTETNNVLAAPYFKDLVTLPTVSNRIRVSIGPSLTNTEYPNAILNGLEIMKMNNSMNSLSTATMVPVTSGSGSNSKKVGVIVGSILGACSVIVLIGVLFVIYMKRRKLAQQRHSKTWIPISANDGTSHTIGSKYSNATTASAATNCGYRIPFLAVQEATNSFDENLVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGVAEFRTEIEMLSQFRHRHLVSLIGYCDEMNEMILIYEYMEKGTLKSHLYGSGLPSLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPSLSREMVNLAEWALKWQKKGQLEQIIDPTLTGKIRPDSLRKFGETAEKCLAEFGVDRPSIGDVLWNLEYALQLQEAVFQGDPEENSTNMIGDLSPQINNFSREESVSAAQFEFPSLNDLSGVSMSKVFSQLVKSEGR* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0370 834 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 19 803 - -
Amo13g0370 834 SMART serkin_6 494 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0370 834 Gene3D Phosphorylase Kinase; domain 1 456 569 - -
Amo13g0370 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Amo13g0370 834 PANTHER OS07G0166700 PROTEIN 19 803 IPR045272 GO:0004714|GO:0006468
Amo13g0370 834 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524
Amo13g0370 834 SUPERFAMILY Protein kinase-like (PK-like) 474 765 IPR011009 -
Amo13g0370 834 Gene3D Transferase(Phosphotransferase) domain 1 570 787 - -
Amo13g0370 834 ProSiteProfiles Protein kinase domain profile. 494 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0370 834 CDD STKc_IRAK 500 765 - -
Amo13g0370 834 Gene3D - 203 386 - -
Amo13g0370 834 Gene3D - 32 179 - -
Amo13g0370 834 Pfam Protein tyrosine and serine/threonine kinase 499 692 IPR001245 GO:0004672|GO:0006468
Amo13g0370 834 Pfam Malectin-like domain 35 384 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0370 Amo-Chr13 5055381 5058598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0370 7 834 Receptor kinase-like Gene Family AT3G46290 65.072 0.0 1094
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Amo13g0370 Malectin_like 3.3e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0370 - - gmx:100806488 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0370 13 5055381 5058598 Amo13g0370 13 5055381 5058598 ECH
Amo18g0205 18 2924223 2927672 Amo13g0370 13 5055381 5058598 ECH
Amo18g0205 18 2924223 2927672 Amo13g0370 13 5055381 5058598 PCT
Amo08g1051 08 17878952 17881465 Amo13g0370 13 5055381 5058598 PCT
Amo13g0370 13 5055381 5058598 Amo18g0205 18 2924223 2927672 PCT
Amo13g0370 13 5055381 5058598 Amo08g1051 08 17878952 17881465 PCT