Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0367 ATGCTAGACAGGGATATGGAGGACAAAACATCGTCGTCGCCGTCAAACAGAACCACGTCGTTTCGGGGACACCCTAGCGGCACGCTCCAAGTGTTGTCCAACCCTTCTTCTTCTTCTTCGCCGCAAATCTCATCCGCTCCTTCAGAAGCGTCCATTCCGTCGGAGGCAGCGGCGCAGAGGGCGGCGGAGTGGGGGCTGGTGCTGGAGACGGACGAGGAGACAGGAAAGCCGCGGGGAGTGGCGCCTCGGACATCAGGCGGTGAGGTTGGCGGCGGAGCAAGTAGCAGCAGCAGTAGTAGTAGAGATGTGAGGGTGGCGCGTGGAGTGCCACGTGTATCGGAGGATGTTAGAGCTGCGCTGTCGACGTTTCAACAGACGTTCGTAGTTTCGGACGCCATGAAAGCAGATTATCCGATTCTGTATGCGAGTGCTGGATTCTTCAACATGACTGGTTACACCTCCAAAGAAGTCATTGGCAGAAACTGTCGGTTTTTACAGGGGAAAGATACAGATCCAGCTGACGTGGCAAAGATAAGGGAAGCTCTGAACATGGGGACAAGCTATTGTGGAAGGTTGCTTAACTACAAGAAAGATGGCACTCCCTTTTGGAACCTTCTCACTATTTCTCCAATCAAAGACCATGATGGAAATGTCCTCAAATTTATCGGAATGTTAGTGGAGGTTAGCAAGCACACAGAGGGGTCAAAGGAAAACATGTTACGCCCCAATGGCCTCCCTGAATCATTGATTCGATATGCCGCTAGAGAGAAAGAGAAGGCAGGGAATTCAGCAAGAGAGTTAGTGGAAGCCATGAAGATGAAGATGAAGAGGCTCAGTGAATCAAACACAAACTCTAATGAGTCCAATAATAATAATAAGAAGAAGAACAAAGCAGCTCCTCCAAGATCAGCATTATTAAGGAGAAAATCAGATAGTAGCATCATTACTTCTTCTACACGTAAATCACTTTCAGAACATTCTAGAAGCAACTCAATGCTCTCTCGCGTTCCTCCTCTTCCTCCTAACAACAACAAACATACTAAGATTAGCTCCCGCCGTCGCCTTTCTTTCATGGGGTTGATTAGGAAAAGTATGTCGAACTATGAAGCTGACGAGGACAGTGTTGAGAGTGACGAGGAGAATGATAATGATAACGAAGAAGGAGATTATGACGAGTGTAATGTGAGGGAAAAGAGAAAGGGCTTTGATCTTGCTACCACACTCGAACGCATTGAAAAGAACTTCGTCATTACTGATCCAAGGCTACCCGATAACCCTATAATCTTTGCATCTGATAGCTTCTTGGAACTTACAGAGTATAGTAGAGAAGAGATCTTGGGAAGAAATTGCAGATTTCTGCAAGGACCTGAAACTGATCGAGCTACAGTGAGAAAAATTAGAGAGGCCATTGACAACCAAATAGAAATTACTGTGCAGCTCATTAATTATACAAAGAGTGGTAAGAAGTTTTGGAATTTGTTTCATTTGCAACCTATGCGAGATCAGAAGGGAGAAGTACAGTATTTTATTGGTGTTCAACTTGATGGTAGCCAACATTTGGAGCCTCTTCACAACTGCATTGCAGATGATACTGCCAAAGAGGGACAATTATTGGTAAAACAAACTGCTGAAAATGTTGATGATGCTGTTAGAGAACTTCCAGATGCTAATATGAAACCAGAAGATCTATGGATGAACCATTCAAAAGTTGTTCACCCTAAACCTCATAGAAAAGATGCTGCTGCTTGGGCAGCTATTCAAAAGATCCTGGATAGTGGAGAACAGATAGAGTTGAAGCATTTTAAGCCAGTAAAGCCTTTGGGAGCAGGAGATACTGGCAGTGTGTATTTGGTGGAGCTATGTGGAAGTGGACAATACTTTGCAATGAAGGCAATGCAGAAAGATGTGATGATGAATCGAAACAAGGTGCATAGAGCTTCCACTGAGAGAGAAATCCTTGACATGTTGGACCACCCTTTTCTTCCTGCTTTATATGCTTCCTTTCAGACTCAAACCCATGTTTGTTTGATAACTGATTACTGCCCTGGTGGTGAATTATTCCTACTTCTTGATCGCCAGCCATCTAAGGTTCTCAAGGAAGATGCTGTCAGATTTTATGCTGCTGAGGTAGTGGTTGCATTGGAGTACCTTCATTGTCAAGGAATAATTTACCGAGATTTGAAGCCAGAGAATGTGTTACTTCAGAGCAATGGACATGTTTCTCTAACAGATTTTGATTTATCATGTTTAACATCCAGCAAACCACAGCTTATAACTCCAACTACAAATGAAAAGAAGAAACATCAAAAAGGTCCAGAAATTCCAATATTTTTGGCAGAACCTATAAGAGAATCAAATTCTTTTGTTGGCACAGAAGAGTATATAGCTCCGGAAATTGTAACTGGTGCAGGTCATACTAGTGCTGTTGATTGGTGGGCTCTAGGAATTCTTTTATATGAAATGCTTTATGGATTTACGCCATTCAGAGGAAAGAATAGGCAAAAAACATTTACAAATATTCTCAATAAGGATCTTAAGTTTCCCAAAAGTAAACAGGTAAGTCTGCATGCAAAGCATTTAATATATGGATTGTTACAAAAAGATCCAAAAAGCAGAATGGGTTCACAAGGAGGAGCTAATGAAATTAAGACACACTCATTCTTTCGTGGTGTCAATTGGGCCCTCGTCAGATGCATGAATCCTCCTACACTTGATGCTCCTCTATTTGAGAAAACTGAGGAAGAAGAAGAAGAGCAAGTAAAAGATGTAAATTCAGACATAGAAGAAATAAATATCTTTTAG 2802 0.4265 MLDRDMEDKTSSSPSNRTTSFRGHPSGTLQVLSNPSSSSSPQISSAPSEASIPSEAAAQRAAEWGLVLETDEETGKPRGVAPRTSGGEVGGGASSSSSSSRDVRVARGVPRVSEDVRAALSTFQQTFVVSDAMKADYPILYASAGFFNMTGYTSKEVIGRNCRFLQGKDTDPADVAKIREALNMGTSYCGRLLNYKKDGTPFWNLLTISPIKDHDGNVLKFIGMLVEVSKHTEGSKENMLRPNGLPESLIRYAAREKEKAGNSARELVEAMKMKMKRLSESNTNSNESNNNNKKKNKAAPPRSALLRRKSDSSIITSSTRKSLSEHSRSNSMLSRVPPLPPNNNKHTKISSRRRLSFMGLIRKSMSNYEADEDSVESDEENDNDNEEGDYDECNVREKRKGFDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVRKIREAIDNQIEITVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHLEPLHNCIADDTAKEGQLLVKQTAENVDDAVRELPDANMKPEDLWMNHSKVVHPKPHRKDAAAWAAIQKILDSGEQIELKHFKPVKPLGAGDTGSVYLVELCGSGQYFAMKAMQKDVMMNRNKVHRASTEREILDMLDHPFLPALYASFQTQTHVCLITDYCPGGELFLLLDRQPSKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSNGHVSLTDFDLSCLTSSKPQLITPTTNEKKKHQKGPEIPIFLAEPIRESNSFVGTEEYIAPEIVTGAGHTSAVDWWALGILLYEMLYGFTPFRGKNRQKTFTNILNKDLKFPKSKQVSLHAKHLIYGLLQKDPKSRMGSQGGANEIKTHSFFRGVNWALVRCMNPPTLDAPLFEKTEEEEEEQVKDVNSDIEEINIF* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0367 933 MobiDBLite consensus disorder prediction 366 392 - -
Amo13g0367 933 Gene3D PAS domain 390 553 - -
Amo13g0367 933 MobiDBLite consensus disorder prediction 278 353 - -
Amo13g0367 933 CDD STKc_phototropin_like 599 907 - -
Amo13g0367 933 MobiDBLite consensus disorder prediction 1 105 - -
Amo13g0367 933 TIGRFAM sensory_box: PAS domain S-box protein 425 515 IPR000014 -
Amo13g0367 933 TIGRFAM sensory_box: PAS domain S-box protein 138 233 IPR000014 -
Amo13g0367 933 MobiDBLite consensus disorder prediction 12 52 - -
Amo13g0367 933 Pfam Protein kinase domain 603 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0367 933 ProSiteProfiles PAS repeat profile. 404 473 IPR000014 -
Amo13g0367 933 ProSiteProfiles PAC domain profile. 474 528 IPR000700 -
Amo13g0367 933 ProSiteProfiles PAS repeat profile. 112 185 IPR000014 -
Amo13g0367 933 PANTHER PHOTOTROPIN-1 90 926 - -
Amo13g0367 933 Pfam PAS domain 423 515 IPR000014 -
Amo13g0367 933 Pfam PAS domain 135 229 IPR000014 -
Amo13g0367 933 SMART pac_2 477 519 IPR001610 -
Amo13g0367 933 SMART pac_2 189 231 IPR001610 -
Amo13g0367 933 SMART serkin_6 601 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0367 933 ProSitePatterns Protein kinases ATP-binding region signature. 607 630 IPR017441 GO:0005524
Amo13g0367 933 SUPERFAMILY PYP-like sensor domain (PAS domain) 135 225 IPR035965 -
Amo13g0367 933 ProSiteProfiles PAC domain profile. 186 240 IPR000700 -
Amo13g0367 933 PANTHER FLIPPASE KINASE 1-RELATED 90 926 - -
Amo13g0367 933 SUPERFAMILY PYP-like sensor domain (PAS domain) 416 515 IPR035965 -
Amo13g0367 933 CDD PAS 415 515 IPR000014 -
Amo13g0367 933 MobiDBLite consensus disorder prediction 278 297 - -
Amo13g0367 933 MobiDBLite consensus disorder prediction 89 103 - -
Amo13g0367 933 SMART pas_2 114 183 IPR000014 -
Amo13g0367 933 SMART pas_2 402 471 IPR000014 -
Amo13g0367 933 MobiDBLite consensus disorder prediction 371 390 - -
Amo13g0367 933 SUPERFAMILY Protein kinase-like (PK-like) 587 908 IPR011009 -
Amo13g0367 933 ProSiteProfiles Protein kinase domain profile. 601 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0367 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 722 734 IPR008271 GO:0004672|GO:0006468
Amo13g0367 933 MobiDBLite consensus disorder prediction 309 346 - -
Amo13g0367 933 Gene3D Transferase(Phosphotransferase) domain 1 685 902 - -
Amo13g0367 933 Gene3D PAS domain 126 294 - -
Amo13g0367 933 Gene3D Phosphorylase Kinase; domain 1 600 684 - -
Amo13g0367 933 CDD PAS 139 228 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0367 Amo-Chr13 4965783 4975329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0367 56 933 AGC Kinase Gene Family AT3G45780 67.073 0.0 1193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Amo13g0367 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0367 K20715 - gmx:100804524 1250.73