Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0361 ATGGAGGAGAAAACATCGTCGTCGCCGTCAAACAGAACGACGTCGTTTCGGGGAGACCCTAGCGGCACGCTCCAAGTGTTGTCCAACCCTTCTTCGAACGAGAAACCGCCGCAAATCTCATCGCCGTTGCGATCTCAGGCTTCGAAATCTGCTCCTTCAGAAGCGTCCATTCCGTCGGAGGCAGCGGCGCAGAGGGCGGCGGAGTGGGGGCTGGTGCTGGAGACGGACGAGGAGACAGGAAAGCCGCGGGGAGTGGCGCCTCGGACATCAGGCGGTGAGGTTGGCGGCGGAGCAAGTAGCAGCAGCAGTAGTAGTAGAGATGTGAGGGTGGCGCGTGGAGTGCCACGTGTATCGGAGGATGTTAGAGCTGCGCTGTCGACGTTTCAACAGACGTTCGTAGTTTCGGACGCCATGAAAGCAGATTATCCGATTCTGTATGCGAGTGCTGGATTCTTCAACATGACTGGTTACACCTCCAAAGAAGGGAAAGATACAGATCCAGCTGACGTGGCAAAGATAAGGGAAGCTCTGAACATGGGGACAAGCTATTGTGGAAGGTTGCTTAACTACAAGAAAGATGGCACTCCCTTTTGGAACCTTCTCACTATTTCTCCAATCAAAGACCATGATGGAAATGTCCTCAAATTTATCGGAATGTTAGTGGAGGTTAGCAAGCACACAGAGGGGTCAAAGGAAAACATGTTACGCCCCAATGGACTCCCTGAATCATTGATTCGATATGCCGCTAGAGAGAAAGAGAAGGCAGGGAATTCAGCAAGAGAGTTAGTGGAAGCCATGAAGATGAAGATGAAGAGGCTCAGTGAATCAAACACAAACTCTAATGAGTCCAATAATAATAATAAGAAGAAGAACAAAGCAGCTCCTCCAAGATCAGCATTATTAAGGAGAAAATCAGATAGTAGCATCATTACTTCTTCTACACGTAAATCACTTTCAGAACATTCTAGAAGCAACTCAATGCTCTCTCGCGTTCCTCCTCTTCCTCCTAACAACAACAAACATACTAAGATTAGCTCCCGCCGTCGCCTTTCTTTCATGGGGTTGATTAGGAAAAGTATGTCGAACTATGAAGCTGACGAGGACAGTGTTGAGAGTGACGAGGAGAATGATAATGATAACGAAGAAGGAGATTATGACGAGTGTAATGTGAGGGAAAAGAGAAAGGGCTTTGATCTTGCTACCACACTCGAACGCATTGAAAAGAACTTCGTCATTACTGATCCAAGGCTACCCGATAACCCTATAATCTTTGCATCTGATAGCTTCTTGGAACTTACAGAGTATAGTAGAGAAGAGATCTTGGGAAGAAATTGCAGATTTCTGCAAGGACCTGAAACTGATCGAGCTACAGTGAGAAAAATTAGAGAGGCCATTGACAACCAAATAGAAATTACTGTGCAGCTCATTAATTATACAAAGAGTGGTAAGAAGTTTTGGAATTTGTTTCATTTGCAACCTATGCGAGATCAGAAGGGAGAAGTACAGTATTTTATTGGTGTTCAACTTGATGGTAGCCAACATTTGGAGCCTCTTCACAACTGCATTGCAGATGATACTGCCAAAGAGGGACAATTATTGGTAAAACAAACTGCTGAAAATGTTGATGATGCTGTTAGAGAACTTCCAGATGCTAATATGAAACCAGAAGATCTATGGATGAACCATTCAAAAGTTGTTCACCCTAAACCTCATAGAAAAGATGCTGCTGCTTGGGCAGCTATTCAAAAGATCCTGGATAGTGGAGAACAGATAGAGTTGAAGCATTTTAAGCCAGTAAAGCCTTTGGGAGCAGGAGATACTGGCAGTGTGTATTTGGTGGAGCTATGTGGAAGTGGACAATACTTTGCAATGAAGGCAATGCAGAAAGATGTGATGATGAATCGAAACAAGGTGCATAGAGCTTCCACTGAGAGAGAAATCCTTGACATGTTGGACCACCCTTTTCTTCCTGCTTTATATGCTTCCTTTCAGACTCAAACCCATGTTTGTTTGATAACTGATTACTGCCCTGGTGGTGAATTATTCCTACTTCTTGATCGCCAGCCATCTAAGGTTCTCAAGGAAGATGCTGTCAGATTTTATGCTGCTGAGGTAGTGGTTGCATTGGAGTACCTTCATTGTCAAGGAATAATTTACCGAGATTTGAAGCCAGAGAATGTGTTACTTCAGAGCAATGGACATGTTTCTCTAACAGATTTTGATTTATCATGTTTAACATCCAGCAAACCACAGCTTATAACTCCAACTACAAATGAAAAGAAGAAACATCAAAAAGGTCCAGAAATTCCAATATTTTTGGCAGAACCTATAAGAGAATCAAATTCTTTTGTTGGCACAGAAGAGTATATAGCTCCGGAAATTGTAACTGGTGCAGGTCATACTAGAATTCTTTTATATGAAATGCTTTATGGATTTACGCCATTCAGAGGAAAGAATAGGCAAAAAACATTTACAAATATTCTCAATAAGGATCTTAAGTTTCCCAAAAGTAAACAGGTAAGTCTGCATGCAAAGCATTTAATATATGGATTGTTACAAAAAGATCCAAAAAGCAGAATGGGTTCACAAGGAGGAGCTAATGAAATTAAGACACACTCATTCTTTCGTGGTGTCAATTGGGCCCTCGTCAGATGCATGTTAAACTTTTTTATATAG 2676 0.4283 MEEKTSSSPSNRTTSFRGDPSGTLQVLSNPSSNEKPPQISSPLRSQASKSAPSEASIPSEAAAQRAAEWGLVLETDEETGKPRGVAPRTSGGEVGGGASSSSSSSRDVRVARGVPRVSEDVRAALSTFQQTFVVSDAMKADYPILYASAGFFNMTGYTSKEGKDTDPADVAKIREALNMGTSYCGRLLNYKKDGTPFWNLLTISPIKDHDGNVLKFIGMLVEVSKHTEGSKENMLRPNGLPESLIRYAAREKEKAGNSARELVEAMKMKMKRLSESNTNSNESNNNNKKKNKAAPPRSALLRRKSDSSIITSSTRKSLSEHSRSNSMLSRVPPLPPNNNKHTKISSRRRLSFMGLIRKSMSNYEADEDSVESDEENDNDNEEGDYDECNVREKRKGFDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVRKIREAIDNQIEITVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHLEPLHNCIADDTAKEGQLLVKQTAENVDDAVRELPDANMKPEDLWMNHSKVVHPKPHRKDAAAWAAIQKILDSGEQIELKHFKPVKPLGAGDTGSVYLVELCGSGQYFAMKAMQKDVMMNRNKVHRASTEREILDMLDHPFLPALYASFQTQTHVCLITDYCPGGELFLLLDRQPSKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSNGHVSLTDFDLSCLTSSKPQLITPTTNEKKKHQKGPEIPIFLAEPIRESNSFVGTEEYIAPEIVTGAGHTRILLYEMLYGFTPFRGKNRQKTFTNILNKDLKFPKSKQVSLHAKHLIYGLLQKDPKSRMGSQGGANEIKTHSFFRGVNWALVRCMLNFFI* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0361 891 CDD PAS 410 510 IPR000014 -
Amo13g0361 891 SUPERFAMILY PYP-like sensor domain (PAS domain) 411 510 IPR035965 -
Amo13g0361 891 ProSiteProfiles PAC domain profile. 181 235 IPR000700 -
Amo13g0361 891 ProSiteProfiles PAC domain profile. 469 523 IPR000700 -
Amo13g0361 891 MobiDBLite consensus disorder prediction 304 341 - -
Amo13g0361 891 PANTHER PHOTOTROPIN-1 93 886 - -
Amo13g0361 891 Gene3D PAS domain 385 548 - -
Amo13g0361 891 SUPERFAMILY PYP-like sensor domain (PAS domain) 139 224 IPR035965 -
Amo13g0361 891 Pfam PAS domain 418 510 IPR000014 -
Amo13g0361 891 Pfam PAS domain 140 224 IPR000014 -
Amo13g0361 891 CDD STKc_phototropin_like 594 886 - -
Amo13g0361 891 MobiDBLite consensus disorder prediction 366 385 - -
Amo13g0361 891 CDD PAS 144 223 IPR000014 -
Amo13g0361 891 MobiDBLite consensus disorder prediction 273 292 - -
Amo13g0361 891 MobiDBLite consensus disorder prediction 94 108 - -
Amo13g0361 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
Amo13g0361 891 MobiDBLite consensus disorder prediction 7 57 - -
Amo13g0361 891 MobiDBLite consensus disorder prediction 361 387 - -
Amo13g0361 891 Gene3D Transferase(Phosphotransferase) domain 1 680 883 - -
Amo13g0361 891 Gene3D PAS domain 131 288 - -
Amo13g0361 891 Pfam Protein kinase domain 598 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0361 891 PANTHER FLIPPASE KINASE 1-RELATED 93 886 - -
Amo13g0361 891 ProSitePatterns Protein kinases ATP-binding region signature. 602 625 IPR017441 GO:0005524
Amo13g0361 891 MobiDBLite consensus disorder prediction 1 109 - -
Amo13g0361 891 ProSiteProfiles Protein kinase domain profile. 596 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0361 891 TIGRFAM sensory_box: PAS domain S-box protein 420 510 IPR000014 -
Amo13g0361 891 Gene3D Phosphorylase Kinase; domain 1 595 679 - -
Amo13g0361 891 SMART serkin_6 596 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0361 891 SMART pac_2 472 514 IPR001610 -
Amo13g0361 891 SMART pac_2 184 226 IPR001610 -
Amo13g0361 891 ProSiteProfiles PAS repeat profile. 399 468 IPR000014 -
Amo13g0361 891 MobiDBLite consensus disorder prediction 273 346 - -
Amo13g0361 891 SUPERFAMILY Protein kinase-like (PK-like) 582 885 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0361 Amo-Chr13 4880056 4889236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0361 61 885 AGC Kinase Gene Family AT3G45780 66.205 0.0 1114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Amo13g0361 Pkinase 3.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0361 K20715 - gmx:100804524 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0361 13 4880056 4889236 Amo13g0361 13 4880056 4889236 ECH
Amo08g1060 08 17961492 17969328 Amo13g0361 13 4880056 4889236 PCT
Amo13g0361 13 4880056 4889236 Amo08g1060 08 17961492 17969328 PCT