Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0359 ATGAATTGCTTTTGTTTGCCAGGGAAATCAAGCAAGAAGAAGCTTGAGACTGATGATTATACCCACACTCAAAAACCCTCCAATCTCTCTCCTTCAGATAAGGTCAAAGTTGATTTGAAACCAAATGTTAAGAAAGAAGATACTCCAAAGAGTGATCAACTTGCTCAGGATGTGAGGAATTTGAATATGAAACAGAATGTTTCCATTGAAGGAGAAGACAGCGGTAATCGGGCAGAGATATTCACTTTTGAGGAACTTACTGCTGCGACCAGAAATTTTGCATTGGATTGCTTTTTGGGCGAAGGAGGGTTCGGCAAGGTCTACAAAGGATACTTGCAGAGAATAGACCAGGTTGTAGCCATTAAGCAATTAGACCCTAATGGACTTCAAGGAGTTCGGGAATTTGCCGCTGAAGTGTTGACACTGAGTATGGCAGACCACCCTAATCTGGTCAAGCTGATTGGGTTTTGTACTGATGGAGATCAGAGGCTGTTGGTTTACGAGTATATGCCGTTGGGATCACTCGAGCATCATTTGCTAGACCTTCCGCCCGGTAAAAAACCACTTGATTGGAATACAAGAATGCAAATAGCAGCCGGTGCAGCTAGGGGGTTGGAGTATTTGCACGATAAAATGAAGCCTCCCATCATATATCGTGACTTGAAATGCTCTAACATTTTGTTAGGTGAGGGGTATCATCCCAAGTTATCTGATTTTGGGTTGGCAAAAGTAGGCCCGAGTGGTGACAAGACACATGTTTCAACAAGGGTGATGGGTACATACGGGTATTGTGCCCCGGATTATGCGATGACAGGTCAGTTGACATTCAAGTCAGATATTTACAGCTTCGGGGTTGTTCTTTTGGAACTCATCACGGGGAGGAAGGCCATTGACCATACGAAATCCGGCAAAGAGCAAAATCTGGTTGCTTGGGCAAGACCGTTATTTAGAGACCGGAGGAAGTTCTCACAAATGGTCGATCCTTTGCTTGAAGGGAAATACCCCGTGAGAGGTTTATACCAAGCTCTTGCTATCGCGGCGATGTGTGTTCAAGAGCAGCCTAACATGCGGCCGGTTATAGTTGACGTCGTCACAGCTCTGAACTACCTCGCATCGCAGAAGTACGATCCTCAAATTCCTCCTGTACAGGGCTCTAGAAGAGGTACGAATTCTCCGAAAGCGAGAAGGGATGATGACGGTAATGAGAATGAGTCAGAGAAATCTGTAAACTAG 1233 0.4501 MNCFCLPGKSSKKKLETDDYTHTQKPSNLSPSDKVKVDLKPNVKKEDTPKSDQLAQDVRNLNMKQNVSIEGEDSGNRAEIFTFEELTAATRNFALDCFLGEGGFGKVYKGYLQRIDQVVAIKQLDPNGLQGVREFAAEVLTLSMADHPNLVKLIGFCTDGDQRLLVYEYMPLGSLEHHLLDLPPGKKPLDWNTRMQIAAGAARGLEYLHDKMKPPIIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKSGKEQNLVAWARPLFRDRRKFSQMVDPLLEGKYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPQIPPVQGSRRGTNSPKARRDDDGNENESEKSVN* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0359 410 PANTHER OS07G0668900 PROTEIN 1 399 - -
Amo13g0359 410 MobiDBLite consensus disorder prediction 1 52 - -
Amo13g0359 410 MobiDBLite consensus disorder prediction 37 52 - -
Amo13g0359 410 SMART serkin_6 93 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0359 410 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 399 - -
Amo13g0359 410 Gene3D Transferase(Phosphotransferase) domain 1 170 380 - -
Amo13g0359 410 CDD STKc_IRAK 99 368 - -
Amo13g0359 410 MobiDBLite consensus disorder prediction 390 410 - -
Amo13g0359 410 Pfam Protein kinase domain 98 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0359 410 ProSiteProfiles Protein kinase domain profile. 93 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0359 410 MobiDBLite consensus disorder prediction 376 410 - -
Amo13g0359 410 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Amo13g0359 410 SUPERFAMILY Protein kinase-like (PK-like) 79 381 IPR011009 -
Amo13g0359 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Amo13g0359 410 Gene3D Phosphorylase Kinase; domain 1 78 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0359 Amo-Chr13 4864459 4868063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0359 1 372 Glycoside Hydrolase AT3G07070 54.155 1.69e-142 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Amo13g0359 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0359 - - gmx:100804000 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1063 08 17994038 17996971 Amo13g0359 13 4864459 4868063 PCT
Amo13g0359 13 4864459 4868063 Amo08g1063 08 17994038 17996971 PCT