Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0358 ATGAGCAATAATGTTGGGAAAAGAGGTCTGGCAGAACAAAATCATAAGTTTTTTGACAATAAGAGGCTCAATAATGGAGTAGTTAATGGAGAGCTGGGTTCTGGGTCATCAAATGATGATAACACAAGATTTAACAGGCAAACCAGGGATGGAAACAATGGGTTGCGGGGGCAAATTCAAGTCCATGACAGCATGCAGATTTCGCAACAACCACCTCAAGGACCAGTTATATGCTGGGAGAGATTTCTCCCTATAAGATCCATAAAAGTTCTGCTGGTGGAAGATGATGATTCAACACGCCATGTTGTCCGAGCTCTTTTACGAAATTGTAGTTATGAAGTCACTGCTGTGTCCAATGGTCTTCAAGCATGGAAAATCCTGGAAGATCCAGGAAATCACATTGATCTTGTCCTTACAGAGGTAGCTATACCGATTTTATCTGGAATAGGTCTTTTGTGCAAGATCATGAACCACAAAACACTGAAAAATATTCCCGTGATTATGATGTCATCTCAAGATTCTATGGGCATAGCGTTTAAGTGTTTGTCAAAAGGTGCAGTTGACTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAGAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGCGAAAGTGGGACACATAACAGAAAATCTGCCAAGACAAGAAGTAACGATGCCTCAGAAAATAATACTGACAGCAGTGATGAGAATGATTGTGGAAGTAGAGGCTTGACTGTTCGAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAGTGTCTAGTTCAAGTTGGCAGTTCTTATCCAGTTTCACCTCATAAACAATTGGTTGATGCCCCTGATAGCATGTGTGCCGAAGTGATGCATACAAAGCCTGAAAAAGCTAGTAGTAGGTGGATGCATGCAACAGAAAAAGAGTGCCATGAACTGGTTGACCATTTTGATAATGTTGCAATGGGTAAAGATTTAGCTATGGGAATAACTTTGAATGTGCAACTAGAGCATGCACCCAAGGAGTTGTCTAGCAATCCTTCGGGTAAAGGGATAGATATTATGTCTGATGTAGATGGTAAGCAACTCAACAAGGGACATATTAATGTCTGTGAAAAAGGACAACTGGATTTCAACAGTGATAAAAACAGGCCTCGGGAAAATCAGGCTATGAATGTTGTTGATGTTACTGATAGCAGCAGTCCACAGGCTGAAAGCAGAGACTTGAATACTCCAAATGGATTTTCCGGTTTCTCACAAACTAAAGCAAGTTGTTCCTTTAAACAGCATCCTTCCCTTGAACTGACTTTGAAAAGACTTGGAGAAGCAAGAGATGCTAAAATTGTCACAAGTGATGAATGCAATATTTTGAGACATTCAGATCTGTCGGCATTCTCAAAATATAATACTGCTTCTTCTGCTAACCAGGCTCAAACTGGAAATGTTGGAAGCTGTTCACCACTTGACAATAGCTTAGCTGCACCAAATGCAGAGACATTACACAACTTTCCATCTCATTCAAACAGCACTCCTCCAAATCAGCAGTCTAATGGGAGCAACAACACCAATGACATGGCCTCCACTAATGCATGTCTTGGGACCAAACCTGAAACTTTGGACAAAAAGCCAGAATCTGCAAGAGGGATTGGCTCTTTTAATTCTTCCGCATTGCAAACTGTGCAGCACAATAGTATCACTTCATCTCAAAAGAAAATTTCTGCCCAAGGAGAATATGCAGAAATTGTTAAAGGACAAGTGGAATGCTCTGAACAAGGATTACAACTCCAGCAAAATCACTATCAAATTCATCATTACAATCACATCGCTCACAAAGCTGCTCTAGATCTCCGGTCAGGTCATGATGATCCCTCAATGAAAGGCTCCTCCAAGGCTGCCCAGCAATGTGTATCATCAAATGTCTTTGGTGGGCCAGCAGAAAGTAATGCTGCAAATTTCGGCATAGATGGAAATGCTGCTGAGAGTGATCATGGGAGCAATGGACAGGATGCATGCAGTAACACCTTGACAGTTAGAACTATGAATGTGGAAAACGGTCATGTAGCAAGTGGGAGCAATGGAGGATGTTGCAATGATAGGAAAAACATTGGGAATGGTGCAGATGAAGAAAGAATGGCGTTGAGAGAGGCTGCCTTGACAAAATTTCGTCAGAAGAGAAAAGAAAGATGCTTTGAGAAGAAGGTTCGATACCACAGCCGGAAAAAGCTAGCCGAACAGCGGCCACGAATCCGTGGACAATTTGTTCGACGGATAGCGTCTGACCCCAAAGAAGAAAGAGATATAGAAAGCAACAACATGGATTCAAGCGATGCTCTCCAATGA 2367 0.4204 MSNNVGKRGLAEQNHKFFDNKRLNNGVVNGELGSGSSNDDNTRFNRQTRDGNNGLRGQIQVHDSMQISQQPPQGPVICWERFLPIRSIKVLLVEDDDSTRHVVRALLRNCSYEVTAVSNGLQAWKILEDPGNHIDLVLTEVAIPILSGIGLLCKIMNHKTLKNIPVIMMSSQDSMGIAFKCLSKGAVDFLVKPIRRNELRNLWQHVWRRCHSSSGSGSESGTHNRKSAKTRSNDASENNTDSSDENDCGSRGLTVRDGSDNGSGTQSSWTKCLVQVGSSYPVSPHKQLVDAPDSMCAEVMHTKPEKASSRWMHATEKECHELVDHFDNVAMGKDLAMGITLNVQLEHAPKELSSNPSGKGIDIMSDVDGKQLNKGHINVCEKGQLDFNSDKNRPRENQAMNVVDVTDSSSPQAESRDLNTPNGFSGFSQTKASCSFKQHPSLELTLKRLGEARDAKIVTSDECNILRHSDLSAFSKYNTASSANQAQTGNVGSCSPLDNSLAAPNAETLHNFPSHSNSTPPNQQSNGSNNTNDMASTNACLGTKPETLDKKPESARGIGSFNSSALQTVQHNSITSSQKKISAQGEYAEIVKGQVECSEQGLQLQQNHYQIHHYNHIAHKAALDLRSGHDDPSMKGSSKAAQQCVSSNVFGGPAESNAANFGIDGNAAESDHGSNGQDACSNTLTVRTMNVENGHVASGSNGGCCNDRKNIGNGADEERMALREAALTKFRQKRKERCFEKKVRYHSRKKLAEQRPRIRGQFVRRIASDPKEERDIESNNMDSSDALQ* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0358 788 MobiDBLite consensus disorder prediction 233 249 - -
Amo13g0358 788 MobiDBLite consensus disorder prediction 507 543 - -
Amo13g0358 788 Pfam CCT motif 723 764 IPR010402 GO:0005515
Amo13g0358 788 MobiDBLite consensus disorder prediction 761 780 - -
Amo13g0358 788 MobiDBLite consensus disorder prediction 661 680 - -
Amo13g0358 788 Pfam Response regulator receiver domain 90 201 IPR001789 GO:0000160
Amo13g0358 788 SMART REC_2 88 203 IPR001789 GO:0000160
Amo13g0358 788 MobiDBLite consensus disorder prediction 211 267 - -
Amo13g0358 788 Gene3D - 87 257 - -
Amo13g0358 788 SUPERFAMILY CheY-like 86 212 IPR011006 -
Amo13g0358 788 MobiDBLite consensus disorder prediction 761 788 - -
Amo13g0358 788 MobiDBLite consensus disorder prediction 385 424 - -
Amo13g0358 788 MobiDBLite consensus disorder prediction 28 55 - -
Amo13g0358 788 ProSiteProfiles CCT domain profile. 723 765 IPR010402 GO:0005515
Amo13g0358 788 CDD psREC_PRR 90 193 - -
Amo13g0358 788 ProSiteProfiles Response regulatory domain profile. 89 207 IPR001789 GO:0000160
Amo13g0358 788 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 757 IPR045279 GO:0009736
Amo13g0358 788 MobiDBLite consensus disorder prediction 394 424 - -
Amo13g0358 788 MobiDBLite consensus disorder prediction 507 555 - -
Amo13g0358 788 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 30 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0358 Amo-Chr13 4848066 4856626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0358 35 293 Response Regulator Gene Family AT5G60100 62.264 2.09e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Amo13g0358 Response_reg 1.1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0358 K12129 - gmx:100785796 1022.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0358 13 4848066 4856626 Amo13g0358 13 4848066 4856626 ECH