LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g0356	ATGTTCGATCTTAATCTAAATGCGGATTGCGACGATTCGACTCAGAACGGTGACTCGGAAGTTGTGATGCTGTGCGAGAAGCTTCCAGAAGGTTCCTGGAACCAAATGACGGAGTCGGCCGGGACATCGAACTCCTCCGTCGTCAATGCCGACGGTTCGAGCAACAACGACGACTCGTCGTGCTCTACGCGCGTCACCGACAACGCGCTCACTTTCAATTTCGGAATCCTGAAAGCGGACGACAACGGCGTCGTGACGAAGGAGCTGTTTCCGGTGAACGGAGGAGCGAACTTCGTTGATTCCGTGAACTGGCAGAAGAGTAAGTTTCAAGGAACGAACGGCTCGATTGATCTCTCGTTCAATCGGCAGGGAGTGGTGGACGGTGAGGTAAAGGTGGTTCAGGTTCAACAACCGGCGAAGAAGAGTAGAAGAGGACCAAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACCTTCTATAGAAGAACAGGACGATGGGAATCGCATATCTGGGATTGCGGTAAACAAGTTTATTTGGGCGGATTCGACACTGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGAGGAGTTGAAGCTGATATCAATTTCAATCTGAGTGATTACGAGGACGATCTTAAACAGACGAAGAATCTATCCAAGGAGGAATTCGTGCACATACTCCGTCGCCAAAGCACTGGTTTCTCAAGGGGGAGTTCAAAGTACCGAGGAGTGACACTCCACAAGTGTGGCCGTTGGGAGGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCTGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGCCAAGTACATATGAAGGAGAGATGAAATCTCCAGCCATCAATGAAGGTGGCAGTCCTAATCTTGAACTTAATTTGGGCATATCAACTCCAGGACATGGTCTGAAAGAAAACAGGGGGCAACTCCAGTTCCCCTGGGTCCCTTACAGCATGCATGCTGGAAGAACAATGGTGGAAACCAATGTTAATTCAGTAATTGGTAATCCATCTTCAGAAAGGCTGGTTGCAACTGAAGAGCATCCTTCTCGGTGGAATGGCGTGAATCCTAGTTTCTTTCCCAATCAGGAGAGAGCTGATAGGATCAGCATAGATCATTCCAAAGGACTCCCCGGTTGGCCATGGCAAATGCACAACCAAATCACTGCTACCCCAGTGCCTCCTTTCTCTGTTGCAGCATCATCAGGATTCTCCATCTCAGCTACATTTCCATCTAACGCCATCTTTCCGGCAAAATCCATGAACTCAACTCCCCAAAGTCTTTGTTTTCCTTCATCTGCCGCTCCTATCAGCACTGCAACTCAATATTACTACCAGGCTAAGCCCCGGCAGGCACCACCCTAG	1461	0.4908	MFDLNLNADCDDSTQNGDSEVVMLCEKLPEGSWNQMTESAGTSNSSVVNADGSSNNDDSSCSTRVTDNALTFNFGILKADDNGVVTKELFPVNGGANFVDSVNWQKSKFQGTNGSIDLSFNRQGVVDGEVKVVQVQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLSDYEDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMKSPAINEGGSPNLELNLGISTPGHGLKENRGQLQFPWVPYSMHAGRTMVETNVNSVIGNPSSERLVATEEHPSRWNGVNPSFFPNQERADRISIDHSKGLPGWPWQMHNQITATPVPPFSVAASSGFSISATFPSNAIFPAKSMNSTPQSLCFPSSAAPISTATQYYYQAKPRQAPP*	487

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g0356	486	SUPERFAMILY	DNA-binding domain	151	209	IPR016177	GO:0003677
	Amo13g0356	486	Gene3D	AP2/ERF domain	243	302	IPR036955	GO:0003700\|GO:0006355
	Amo13g0356	486	Gene3D	AP2/ERF domain	151	209	IPR036955	GO:0003700\|GO:0006355
	Amo13g0356	486	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7	1	456	-	-
	Amo13g0356	486	ProSiteProfiles	AP2/ERF domain profile.	244	301	IPR001471	GO:0003700\|GO:0006355
	Amo13g0356	486	CDD	AP2	243	303	IPR001471	GO:0003700\|GO:0006355
	Amo13g0356	486	ProSiteProfiles	AP2/ERF domain profile.	152	208	IPR001471	GO:0003700\|GO:0006355
	Amo13g0356	486	Pfam	AP2 domain	243	293	IPR001471	GO:0003700\|GO:0006355
	Amo13g0356	486	Pfam	AP2 domain	152	200	IPR001471	GO:0003700\|GO:0006355
	Amo13g0356	486	SMART	rav1_2	244	307	IPR001471	GO:0003700\|GO:0006355
	Amo13g0356	486	SMART	rav1_2	152	214	IPR001471	GO:0003700\|GO:0006355
	Amo13g0356	486	CDD	AP2	152	210	IPR001471	GO:0003700\|GO:0006355
	Amo13g0356	486	MobiDBLite	consensus disorder prediction	34	62	-	-
	Amo13g0356	486	PRINTS	Ethylene responsive element binding protein signature	283	303	IPR001471	GO:0003700\|GO:0006355
	Amo13g0356	486	PRINTS	Ethylene responsive element binding protein signature	245	256	IPR001471	GO:0003700\|GO:0006355
	Amo13g0356	486	SUPERFAMILY	DNA-binding domain	243	302	IPR016177	GO:0003677
	Amo13g0356	486	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	1	456	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g0356	Amo-Chr13	4793262	4797137	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g0356	81	329	AP2-EREBP Transcription Factor Family	AT4G36920	69.261	3.71e-99	303

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Amo13g0356		AP2	2.9e-09	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g0356	K09284		-	gmx:100788303	630.557

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo13g0356	13	4793262	4797137	Amo13g0356	13	4793262	4797137	ECH
	Amo18g0433	18	5726914	5731655	Amo13g0356	13	4793262	4797137	ECH
	Amo18g0433	18	5726914	5731655	Amo13g0356	13	4793262	4797137	PCT
	Amo13g0356	13	4793262	4797137	Amo18g0433	18	5726914	5731655	PCT