Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0348 ATGGCCGGCGTTAATCCAAACGGTGCCGCGGATTTTCCGGCGGTTCCGACTCACGGTGGACAGTTCATTCAGTACAACATCTTCGGTAACCTCTTTGAGGTCACCGCTAAGTACCGTCCTCCGATCATGCCTATCGGTCGTGGAGCTTACGGAATCGTTTGCTCGGTGTTGAATACTGAGACTAATGAGCTGGTTGCTGTTAAGAAGATAGCGAACGCGTTCGATAATCACATGGATGCGAAGCGCACACTCCGTGAGATTAAGCTCCTGAGGCATCTGGATCATGAAAACGTGATTGGTTTAAGAGATGTTATTCCTCCACCCCTTCGTAGAGAGTTTAATGATGTCTATATTGCTACGGAGCTCATGGATACTGATCTTCATCACATTATTCGCTCAAATCAGGGCCTGTCGGAGGAACACTGCCAGTACTTCTTGTATCAGATTCTTCGTGGGCTGAAGTACATACATTCTGCAAACATAATTCATAGAGATTTGAAACCAAGCAATCTGTTGCTGAATGCAAATTGCGATTTAAAGATTATTGATTTTGGTCTTGCGCGGCCAACTTTAGAAAATGATTTCATGACAGAGTATGTTGTCACAAGGTGGTACAGGGCTCCTGAACTGCTGTTGAACTCGTCTGATTACACTTCTGCAATTGATGTTTGGTCTGTTGGTTGCATCTTTATGGAACTCATGAATAAAAAGCCTCTCCTCCCAGGGAAGGATCACGTGCATCAGATGCGCCTATTGACAGAGCTTCTTGGCACTCCAACTGAGGCAGACCTTGGGTTAGTGAAAAGTGAGGATGCGAGAAGATATATCCGACAACTTCCTCAATATCCTCGCCAACCTTTAGCTAGGGTCTTCCCCCATGTTCATCCCTTGGCCATTGATCTTGTTGATAAAATGTTGACAATTGATCCAACTAAAAGAATTACAGTTGAAGAAGCACTGGCCCATCCATATCTTGAAAAGCTGCATGATATAGCCGACGAACCTGTCTGCATGGAACCATTCTCATTTGACTTTGAGCAACAGCAGTTGGATGAAGAACAAATAAAAGAGATGATCTACAGAGAGGCATTGGCACTCAATCCTGAGTATGCTTAA 1116 0.4453 MAGVNPNGAADFPAVPTHGGQFIQYNIFGNLFEVTAKYRPPIMPIGRGAYGIVCSVLNTETNELVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGLRDVIPPPLRREFNDVYIATELMDTDLHHIIRSNQGLSEEHCQYFLYQILRGLKYIHSANIIHRDLKPSNLLLNANCDLKIIDFGLARPTLENDFMTEYVVTRWYRAPELLLNSSDYTSAIDVWSVGCIFMELMNKKPLLPGKDHVHQMRLLTELLGTPTEADLGLVKSEDARRYIRQLPQYPRQPLARVFPHVHPLAIDLVDKMLTIDPTKRITVEEALAHPYLEKLHDIADEPVCMEPFSFDFEQQQLDEEQIKEMIYREALALNPEYA* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0348 371 Gene3D Transferase(Phosphotransferase) domain 1 123 352 - -
Amo13g0348 371 Pfam Protein kinase domain 44 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0348 371 SUPERFAMILY Protein kinase-like (PK-like) 44 333 IPR011009 -
Amo13g0348 371 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Amo13g0348 371 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Amo13g0348 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 370 - -
Amo13g0348 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Amo13g0348 371 ProSiteProfiles Protein kinase domain profile. 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0348 371 Gene3D Phosphorylase Kinase; domain 1 22 362 - -
Amo13g0348 371 SMART serkin_6 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0348 371 CDD STKc_TEY_MAPK 32 368 - -
Amo13g0348 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0348 Amo-Chr13 4716326 4720030 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0348 4 371 MAP Kinase Gene Family AT3G45640 82.973 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Amo13g0348 Pkinase 2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0348 K20536 - gmx:100801339 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0348 13 4716326 4720030 Amo13g0348 13 4716326 4720030 ECH