Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0343 ATGGAGGGAAGTGACACTAACAACACCACCTACTCTAACTCTACTTCTACTTCTTCTGGTGATCCTCCTCCTCCGGCGGCGGCAACGGTGGCGGTTGTTATGAGCCCTTGTGCAGCATGCAAGATCTTGAGGCGAAGATGCACGGAGAAATGCATGCTTGCGCCATATTTCCCTCCCACCGAGCCTACCAAGTTCACCATTGCTCATAGGGTCTTTGGCGCTAGCAACATCGTCAAGTTCTTGCAGGAGATTCCGGAATCTCAAAGAGCTGATGCAGTGAGTAGCATGGTGTATGAGGCAAGTGCAAGAATAAGGGACCCAGTTTATGGTTGTGCAGGTGCAATTTGCCAGCTTCAGAAGCAAGTCAATGAGCTTAGAGCACAATTGGCAAAAACACAAGCTGAGGTTGCAACCATGCAATTTCAACAAGCCAACCTTGTTGCCCTAATTTACATGGAAATGGCACAACAACAAAGTTCCCAACAACAACAACAAGAGTTTGAATCATCACCTCAGCAATCATCAATGGAAGATTTCAATGTTCCAAGCCCTCACTATCAACAAAGTAACATCAACTACTTTGAGGATAACCCTAGCCTCAATTCATTGTGGGAGCCGCTCTGGACATGA 630 0.4683 MEGSDTNNTTYSNSTSTSSGDPPPPAAATVAVVMSPCAACKILRRRCTEKCMLAPYFPPTEPTKFTIAHRVFGASNIVKFLQEIPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELRAQLAKTQAEVATMQFQQANLVALIYMEMAQQQSSQQQQQEFESSPQQSSMEDFNVPSPHYQQSNINYFEDNPSLNSLWEPLWT* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0343 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 19 206 - -
Amo13g0343 209 MobiDBLite consensus disorder prediction 160 182 - -
Amo13g0343 209 Coils Coil 115 142 - -
Amo13g0343 209 MobiDBLite consensus disorder prediction 1 25 - -
Amo13g0343 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 19 206 - -
Amo13g0343 209 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Amo13g0343 209 MobiDBLite consensus disorder prediction 1 23 - -
Amo13g0343 209 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0343 Amo-Chr13 4627531 4629721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0343 32 209 AS2 family AT1G07900 61.878 1.29e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo13g0343 LOB 3.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0343 - - tcc:18590099 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0343 13 4627531 4629721 Amo13g0343 13 4627531 4629721 ECH
Amo18g0443 18 5878961 5880171 Amo13g0343 13 4627531 4629721 ECH
Amo18g0443 18 5878961 5880171 Amo13g0343 13 4627531 4629721 PCT
Amo08g1085 08 18264537 18266331 Amo13g0343 13 4627531 4629721 PCT
Amo13g0343 13 4627531 4629721 Amo18g0443 18 5878961 5880171 PCT
Amo13g0343 13 4627531 4629721 Amo08g1085 08 18264537 18266331 PCT