Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0342 ATGGACTCCGACGACGACCTCCACCGCCTGTTATTGGAGCAACGCTGTGAGCTCGCCACGGCTGAGGCCATCGACTCCGATCTCGAATTCGCATACCGACTACAGCTTGAAGAAGCTCTCGCCGCCTCCCTCGCTTCCCTCCCCTCCTCTTCCTCCCCGCAACCACCACCACCACCACCACCACCAACCAACGATGACAAAAACGACGCTGTTTTGAACGCCACAACGCTCCAGGCGCAAGAACTCGCGAGGGTTGAGCAAGAACTTCGCGACCGCCACCTCAGCGAGGCTGAGGCCCGCAAAACGAGTCTCGATCTCAACCGTCGCGTCCACGATCAGAAAGTCGCCATCGAAATTCTTAGAATCCCCGAAGATGATTGGGTCGAATGGGGCGATAACTTCGAGAAACCCTTCTTCTTCGGGGAGGGTTCTTCTTCTTCGTCGTCGACGAAGAAGAAGAATACTGGGAAGGGCAATTTGGAAATGGACGAAGGCGATGATGGTGCGGTTTTTAGGGTTTACTTTAAGGGTTTGGTGAGCAAAGACGAGAAGTTGAAAAACGGAGAGAAGGTTCTGTTGGCTGGGATTGGGGTTGCGATTTGTGATCCTGAAGATAACTTGATTCTTGAGGTGCAAAAGCCACTCATTGGGTGTGGAACGAGCAAGATTGCTGCTGATCTTAAGGCTTTGATCGAAGGCTTGAATGCTGCGTTCGCTTTGGACTTGAAGCGTGTTCAGTTCTTCTGCGATTACTATCCAATCTTCCAATTCGTTAGGGGAAGATGGCCTGTGAAACAGCGGAAGGTTGCTTTGCTAGTCAATCAGGTGAATGTGCTACGGAGAAAATTTACTTACTGTGCTCCAATGCTTCTCGCAAGACATGATGTCAAGTATGCATTTAAGCTTGCAAGAGAGGCAATCGTTTCTCAATTGACAGCGCCTGCGGACTCTAACGGTATGAAGAATCTGAATGAAACTTGTGTCATATGTTTGGAGGATACCGATGGCAATAACTTTTTTTCGGTTGATGGCTGTCAACACCGGTATTGCTTTTCTTGCATGAGACAACATGTGGAGGTGAAGTTGCTTCATGGGATGGTGCCAAAATGCCCTCATGAAGGATGCAATTCCGAGCTTCAAGTTGACAGCTGCAAGAAATTCTTGACAAATAAATTAATTGAGACCATGCAACTGCGAAAGTTGGAAGCTTCAATTCCAGTTACTGAGAAAGTTTATTGTCCCTATCCACGATGCTCTGCTTTGATGTCAAAAACTGAGCTTTTTGAGTACTCCAAAAATCTTATTGGTGATTTTGAACAATCAGGACCTAAGAAATGTATAAAATGCCATGGTCTCTTCTGTTTTACTTGCAAGGTCCCTTGGCATAGTGGCATGAAATGCTATGATTACAAAAGGTTGAATCCTAACCCTCCTGCTGAAGATTTGAAGCTAAAGTTTCTGGCATCCAGGAGTCTATGGCGCCAGTGCGTGAAATGTAACCATATGATTGAACTCGCTGAAGGCTGCTATCACATGACTTGCAGGTGTGGCTATGAATTCTGCTACAACTGTGGAGCCGAGTGGAAGAACAAGAAAGCAACGTGTTCTTGCCCACTTTGGGCTGAGGACAATATTTGGTTTGAGGATCATGCGAGGGACTCGGACGAAGAAGAAGAAGAGGAGGAGGAAGATGACGAATTTTTTGACTCAGATTATTCAGATGATGAATATTACTAA 1737 0.468 MDSDDDLHRLLLEQRCELATAEAIDSDLEFAYRLQLEEALAASLASLPSSSSPQPPPPPPPPTNDDKNDAVLNATTLQAQELARVEQELRDRHLSEAEARKTSLDLNRRVHDQKVAIEILRIPEDDWVEWGDNFEKPFFFGEGSSSSSSTKKKNTGKGNLEMDEGDDGAVFRVYFKGLVSKDEKLKNGEKVLLAGIGVAICDPEDNLILEVQKPLIGCGTSKIAADLKALIEGLNAAFALDLKRVQFFCDYYPIFQFVRGRWPVKQRKVALLVNQVNVLRRKFTYCAPMLLARHDVKYAFKLAREAIVSQLTAPADSNGMKNLNETCVICLEDTDGNNFFSVDGCQHRYCFSCMRQHVEVKLLHGMVPKCPHEGCNSELQVDSCKKFLTNKLIETMQLRKLEASIPVTEKVYCPYPRCSALMSKTELFEYSKNLIGDFEQSGPKKCIKCHGLFCFTCKVPWHSGMKCYDYKRLNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKNKKATCSCPLWAEDNIWFEDHARDSDEEEEEEEEDDEFFDSDYSDDEYY* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0342 578 ProSiteProfiles Zinc finger RING-type profile. 327 371 IPR001841 -
Amo13g0342 578 Pfam Reverse transcriptase-like 193 306 IPR002156 GO:0003676|GO:0004523
Amo13g0342 578 SUPERFAMILY RING/U-box 481 544 - -
Amo13g0342 578 MobiDBLite consensus disorder prediction 50 65 - -
Amo13g0342 578 MobiDBLite consensus disorder prediction 141 155 - -
Amo13g0342 578 Gene3D - 465 574 - -
Amo13g0342 578 SUPERFAMILY RING/U-box 325 407 - -
Amo13g0342 578 SMART ibrneu5 394 467 IPR002867 -
Amo13g0342 578 SMART ibrneu5 480 537 IPR002867 -
Amo13g0342 578 MobiDBLite consensus disorder prediction 552 578 - -
Amo13g0342 578 Pfam IBR domain, a half RING-finger domain 409 467 IPR002867 -
Amo13g0342 578 Pfam IBR domain, a half RING-finger domain 486 535 IPR002867 -
Amo13g0342 578 ProSiteProfiles TRIAD supradomain profile. 323 547 IPR044066 -
Amo13g0342 578 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 548 IPR031127 GO:0004842|GO:0016567
Amo13g0342 578 MobiDBLite consensus disorder prediction 141 161 - -
Amo13g0342 578 ProSitePatterns Zinc finger RING-type signature. 345 354 IPR017907 -
Amo13g0342 578 MobiDBLite consensus disorder prediction 551 578 - -
Amo13g0342 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 406 IPR013083 -
Amo13g0342 578 MobiDBLite consensus disorder prediction 44 69 - -
Amo13g0342 578 Gene3D - 171 313 IPR036397 GO:0003676
Amo13g0342 578 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 58 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0342 Amo-Chr13 4608190 4611496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0342 170 526 C3H Transcription Factor Family AT2G19610 35.165 1.62e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0342 - - ahf:112736554 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0342 13 4608190 4611496 Amo13g0342 13 4608190 4611496 ECH