Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0321 ATGAGTTCTCAGGAAAAGTCTCTGACTTTGGGTGGACATGAACAACAACATGCTGATGCTGATGCTGATGCAGCAGCTTCTTGCAGAAGAACAGTTTCTCTGCCAGCTCAAAAGGTTGGTGATCCAATGGGGATAACCGAAGAAACCATGCATGTTCCTCCAAGGAAGCGACAGAATCTTCTCCTAGAAATTCCCTCAAGAACTCCAGAAGAATGCTCTCAAGATTATGTGGCAATCAAAATGCCAATGACACCAAGTCCCACTCCCACCCCAAAGAGAGTGAACTTTCTCATATCTTCTCGCTCGGTCGATGCTCCTATGCATACTTCTCCAGGGCCTTCAGCTTCAAAAGGCAGATCATCCATAAGAAGCATTCTACCGAAATTGAGCTTCAGGTATCGGCCACCAACGGATACTGAAAAGGGTACTACTTCAGCACAAGAAGGTTCCTCTTCAGGTCATCGCGAAAAGCCATCAATCTCAAGATCACTATCCCTTAGTAAGATATTTACTCCTAGGATTAAAAGAACATCATCATTACCACTAGGAGAAATGGGACATTCAAATCCAGAATCTGCTCATGGTGGAAGTGTCGGTGGTCCTCTAAATAAAGGAGAGCCGCAGCGTAAGATAGCTCGCTCGCTTTCAGTGCCTGTCAATAACAAAGATAAAGGCATAAGGAGGATGGATTCATTTTACCGTATTGTTCCTACCACCCCTCGAGTGAAGGAAGGAAATGCATTGTCATCCACATCCCCAACAAAGAATTCCGAAATTAATGACGCTGATGATGACGACGGAGAAGATATACCTGAAGAAGAGGCTGTGTGTAGGATTTGTCTGGTTGATTTATGTGAAGGAGGTGAAACCTTCAAGTTGGAATGTAGCTGCAAAGGAGAACTTGCTCTGGCTCACCAAGAATGTGCAATTAAATGGTTTAGTATCAAGGGCAACAGAACCTGTGATGTATGCAAGGAAGATGTTCAGAACCTACCTGTCACTTTATTACGGATCCAAAGTGTTCGAGGCCGGAATCCAGGAATAAGTAGGACTCAGCTCGAAGATGTAAACGGATACAGGGTATGGCAGGAAGTTCCGGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGTTATTGGTCACGAAAATGGGAACCGGTGCAATCGCCATATCTCTTCCTTTTTCCTGTGTGCTAGGCCTACTTTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAGTTTGCACTTGTGGTTCTTTTTGCGCATATATTTTACTCCGTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTGGCAACATTCGCCGGTTTCGGTGTCGTTATGAGTGGAAGTTCTATTCTTGTTGAGTTCTTCAGATGGAGAAGAAGATGGCAACAACAACAACAAGGTCCACAACTGATGACACAACCTCGGCCTGCAAATACGCCGCATCCGGTGGTGCCTCCGAACCAGAATCAAACTGTGGAACAAGATCAACAGAACTCAACTCAAAGCTGA 1560 0.4494 MSSQEKSLTLGGHEQQHADADADAAASCRRTVSLPAQKVGDPMGITEETMHVPPRKRQNLLLEIPSRTPEECSQDYVAIKMPMTPSPTPTPKRVNFLISSRSVDAPMHTSPGPSASKGRSSIRSILPKLSFRYRPPTDTEKGTTSAQEGSSSGHREKPSISRSLSLSKIFTPRIKRTSSLPLGEMGHSNPESAHGGSVGGPLNKGEPQRKIARSLSVPVNNKDKGIRRMDSFYRIVPTTPRVKEGNALSSTSPTKNSEINDADDDDGEDIPEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCKEDVQNLPVTLLRIQSVRGRNPGISRTQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQQQQQGPQLMTQPRPANTPHPVVPPNQNQTVEQDQQNSTQS* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0321 519 MobiDBLite consensus disorder prediction 1 67 - -
Amo13g0321 519 SMART ringv_2 276 325 IPR011016 GO:0008270
Amo13g0321 519 MobiDBLite consensus disorder prediction 483 519 - -
Amo13g0321 519 MobiDBLite consensus disorder prediction 501 519 - -
Amo13g0321 519 SUPERFAMILY RING/U-box 273 328 - -
Amo13g0321 519 CDD RING_CH-C4HC3_MARCH 277 325 - -
Amo13g0321 519 MobiDBLite consensus disorder prediction 137 174 - -
Amo13g0321 519 Pfam RING-variant domain 277 324 IPR011016 GO:0008270
Amo13g0321 519 MobiDBLite consensus disorder prediction 243 257 - -
Amo13g0321 519 MobiDBLite consensus disorder prediction 90 123 - -
Amo13g0321 519 MobiDBLite consensus disorder prediction 80 216 - -
Amo13g0321 519 PANTHER OS02G0165000 PROTEIN 46 495 - -
Amo13g0321 519 ProSiteProfiles Zinc finger RING-CH-type profile. 269 331 IPR011016 GO:0008270
Amo13g0321 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 332 IPR013083 -
Amo13g0321 519 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 46 495 - -
Amo13g0321 519 MobiDBLite consensus disorder prediction 243 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0321 Amo-Chr13 4339237 4343451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0321 263 331 C3H Transcription Factor Family AT2G37950 45.714 9.87e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0321 - - gmx:100788108 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0321 13 4339237 4343451 Amo13g0321 13 4339237 4343451 ECH
Amo18g0480 18 6254822 6257740 Amo13g0321 13 4339237 4343451 PCT
Amo13g0321 13 4339237 4343451 Amo18g0480 18 6254822 6257740 PCT