Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0310 ATGGCTAAAGATGTTGAAGTTGAAGAGCAAAGAGGAGGAGGAGGAGGAGAATACTCAGCAAAAGACTACCATGAACCACCACCAGCACCATTGATTGATGCAGAGGAGCTTACAAAGTGGTCCTTCTATAGAGCACTCATAGCTGAGTTCATAGCAACACTTTTATTCCTTTACATCACTGTCTTGACCATTATTGGTTATAGTAACCAAAGTGATACCACAATCAAGGGTAACACTCAGTGTGATGGTGTTGGAATCTTGGGTATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTATTGCACTGCTGGCATTTCCGGAGGACACATCAACCCTGCAGTGACATTTGGGTTGTTCCTTGGCCGGAAGGTGTCGCTGATAAGGGCACTGTTGTACATAGTGGCACAGTGTGCCGGCGCCATCTGCGGCGCCGGACTGGCCAAGGGATTCCAGAAAGCTTACTTTGATAGGTATGGAGGTGGTGCCAACTACGTTCATCCTGGTTACAACAAAGGAACTGCTTTGGGTGCTGAAATTATTGGCACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGAAACGCCAGAGACTCCCATGTTCCTGTGTTGGCACCACTGCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACAATCCCGGTAACCGGCACCGGCATCAACCCGGCAAGAAGCTTCGGAGCTGCCGTGATTTACAACAAAGACAAAATCTGGGATGACCATTGGATATTCTGGGTTGGACCAATTCTTGGAGCTGCAGCGGCTGCAATCTACCATGAACACATTATTAAAGCATCTGCCATAAAAGCCCTTGGATCCTTCAGGAGCAACCATTAA 876 0.4772 MAKDVEVEEQRGGGGGEYSAKDYHEPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTIIGYSNQSDTTIKGNTQCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYIVAQCAGAICGAGLAKGFQKAYFDRYGGGANYVHPGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNKDKIWDDHWIFWVGPILGAAAAAIYHEHIIKASAIKALGSFRSNH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0310 291 CDD MIP 44 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0310 291 PANTHER AQUAPORIN PIP2-7 1 290 - -
Amo13g0310 291 Pfam Major intrinsic protein 36 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0310 291 MobiDBLite consensus disorder prediction 1 25 - -
Amo13g0310 291 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Amo13g0310 291 SUPERFAMILY Aquaporin-like 36 277 IPR023271 -
Amo13g0310 291 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0310 291 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0310 291 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0310 291 PRINTS Major intrinsic protein family signature 179 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0310 291 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0310 291 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0310 291 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 290 IPR034294 -
Amo13g0310 291 TIGRFAM MIP: MIP family channel proteins 48 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0310 291 Gene3D Glycerol uptake facilitator protein. 29 291 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0310 Amo-Chr13 4245159 4247461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0310 1 289 Major Intrinsic Protein MIP AT2G37170 77.163 8.42e-164 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0310 K09872 - gmx:100811119 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0310 13 4245159 4247461 Amo13g0310 13 4245159 4247461 ECH
Amo18g0470 18 6137585 6140238 Amo13g0310 13 4245159 4247461 ECH
Amo18g0486 18 6294696 6296902 Amo13g0310 13 4245159 4247461 PCT
Amo13g0310 13 4245159 4247461 Amo18g0486 18 6294696 6296902 PCT