LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g0309	ATGCCGCCAAAGTTCGATCCATCTCAAGTCGTCGACGTCTACGTCCGCGTCACCGGAGGAGAAGTCGGCGCCGCCAGTTCCCTCGCCCCTAAGATCGGTCCACTCGGTCTCTCTCCAAAGAAGATCGGAGAAGACATCGCTAAAGAAACCGCGAAGGATTGGAAGGGTCTCCGAGTGACCGTGAAGCTCACGGTTCAGAACCGTCAGGCGAAGGTGTCCGTCGTGCCGTCCGCCGCCGCGCTAGTCATCAAGGCACTCAAGGAGCCGGAGCGTGACCGGAAGAAGACGAAGAACATCAAGCATAACGGGAACATCTCGCTTGATGACGTCATCGAGATTGCTAGGGTTATGAGGCCGAGGTCGATGGCCAAGGAGCTCGGCGGCACTGTGAAGGAGATCTTGGGAACTTGCGTCTCCGTCGGGTGCACGGTGGACGGTAAGGACCCTAAGGATTTGCAGGAGGAGATTACTGATGGTGATGTCGAAGTGCCTCAGGATTGA	501	0.5729	MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKELGGTVKEILGTCVSVGCTVDGKDPKDLQEEITDGDVEVPQD*	167

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g0309	166	Hamap	50S ribosomal protein L11 [rplK].	9	146	IPR000911	GO:0003735\|GO:0005840\|GO:0006412
	Amo13g0309	166	Pfam	Ribosomal protein L11, RNA binding domain	75	144	IPR020783	GO:0003735\|GO:0005840\|GO:0006412
	Amo13g0309	166	PANTHER	60S RIBOSOMAL PROTEIN L12	1	166	-	-
	Amo13g0309	166	SMART	rl11c	13	145	IPR000911	GO:0003735\|GO:0005840\|GO:0006412
	Amo13g0309	166	Gene3D	-	82	164	IPR036769	-
	Amo13g0309	166	SUPERFAMILY	Ribosomal L11/L12e N-terminal domain	1	87	IPR036796	-
	Amo13g0309	166	Gene3D	-	1	81	IPR036796	-
	Amo13g0309	166	Pfam	Ribosomal protein L11, N-terminal domain	13	69	IPR020784	-
	Amo13g0309	166	SUPERFAMILY	Ribosomal protein L11, C-terminal domain	76	149	IPR036769	-
	Amo13g0309	166	PANTHER	60S RIBOSOMAL PROTEIN L12	1	166	IPR000911	GO:0003735\|GO:0005840\|GO:0006412
	Amo13g0309	166	MobiDBLite	consensus disorder prediction	145	166	-	-
	Amo13g0309	166	ProSitePatterns	Ribosomal protein L11 signature.	131	146	IPR020785	GO:0003735\|GO:0005840\|GO:0006412
	Amo13g0309	166	CDD	Ribosomal_L11	13	144	IPR000911	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g0309	Amo-Chr13	4230414	4231844	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g0309	1	166	Cytoplasmic Ribosomal Protein Gene Family	AT5G60670	89.157	3.24e-108	304

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g0309	K02870		-	twl:119995694	320.857

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo13g0309	13	4230414	4231844	Amo13g0309	13	4230414	4231844	ECH
	Amo18g0488	18	6302289	6303180	Amo13g0309	13	4230414	4231844	ECH