Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0300 ATGAAGGAAGGTGAGAAGAGCTTGGATCCGCAGCTATGGCATGCGTGTGCAGGTTCCATGGTTCAGATGCCTCAAGTGAACTCGAAAGTTTTCTACTTTCCACAAGGGCATGCAGAACACGCTCAAACCGCCATTGATCTCTCAACTCCTTCTTTGAGGGTTCCACCACTCATCCCTTGCAGGGTTGCAACAGTGAGATTCATGGCTGACCCTGAAACAGATGAAGTTTTCGCAAAGATAAAGCTTGTTCCACTGAAAAGTTCAGAGCTTGATCAAAACGACAACACCTTGGAGGGTGAAGTTGTTGTGGAGAATCAAGAAAAGCCTGCATCTTTTGCAAAGACTTTGACCCAATCTGATGCTAACAATGGTGGGGGTTTCTCAGTCCCTCGTTACTGTGCAGAAACCATCTTCCCCCGGCTCGATTACTCGGCGGAGCCGCCGGTTCAGACGGTGGTGGCAAAGGATGTTCATGGTGAGCTATGGAAGTTTAGGCATATATATAGAGGTACACCAAGGAGGCACTTGCTTACAACTGGTTGGAGCACTTTTGTTAATCAGAAGAAGCTTGTAGCTGGTGATTCTGTGGTGTTTCTGAGGGCTGAAAATGGTGATCTTTGTGTTGGGATTAGGAGGGCAAAAAGGGGAATTGGAATTGGAATTGGTGGTGGTTGTGAGGGTTCATCTTTGTGGAGTTCAGCTTCTTCTGGTAATGGTAATAGTAATGGAGGGCCTTATGGAGCATTGTCAATGTTCTTGAGAGAGGAGAACAACAAGCTTTTAAGGAATAGTAACGGAAGGTGTTCTTATTCTTCTTCTTCTTCTTCTTCAAGGGTGAGAGCTGAAGATGTTGTGGAAGCTGTGTCAATGGCTGCAAGGAACCAAGCATTTGAGGTTGTGTATTCTCCAAGGGCAAGCACTCCTGAGTTCTGCATTAAGGCTTCTTCTGTGAGTGATGCAATGAGGATCCAATGGTGTTCTGGCATGAGGTTCAAGATGCCCTTTGAGACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGGACTGTTGCTTCCGTTCAGGTTGCTGATCCTATCCGCTGGCCGAATTCGCCTTGGCGAATTCTTCAGGTTACTTGGGATGAGCCTGATTTGCTACAAAATGTGAAGAGAGTTAGTCCATGGTTGGTTGAATTGGTATCAAACATGCCAATCATCAATATCTCGCCATTCTCGCCACCAAGGAAGAAGTTGAGGTTTCCTCAGCACCCAGACTTCCCTCAGGACATTCAGTTCACATCATTACCAACGTTTCCGGGCAATTATATCGGGCCGAATAGCCCCATGTATTGTTTATCTGAAAACGCTCCCGCAAGCATACAGGGAACCAGGCATGCTCAAATTGGAATATCTCTTTCAGATTTCCACCTCAGCAATAAACTGCAGTTGGGGCTGCTTCCAACTAGTATCCATCGGCTCGATGTTCATAATCGCGACATGACCAACCATGATAAGAGCAAAGAGAGCTTATCATGCTTGCTCACCATGGGAAAATCCAACAAGAGTCTGGAGAGTTCTGATAACAATGTTAAGACACACCAGTTTTTGCTTTTTGGTCAGCCTATTCTCACTGAGCAACAAATCTCTCGAACCGGAAAAGACTCGCCGGACGAGACTAAGATCAAAGAGAAGTGCTTCTTAGGTGAAGCTAAATTTGCAGTTTCACAGCACATTCCACCAGGAAAAGCTTCTAATGCTGCCGAGTTTTCGTGGCAAATCGGCTTGGAAACTAGCCATTGCAAGGTTTTCTTGGAATCAGAAGATGTAGGAAGAACCTTAGACCTATCAAGCCTTGGTTCATATGAAGAACTCTATAGAAAACTGGCCAACATGTTTGATATGGAACGATCTGAGATCTTCAACCATGTTCTTTACCGCGACGAAACAAGTGCTGTTAAGAAAATTGGAGAAGAACCCTTCAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTTATGGATTCAAGCAGCAAAAATATTACAAGGGCATGGATTACAGGGAGTCGCAGTGGTGAACATGGAATTGATGCATCAAACAAAACTGGTCCTCTTAGCATATTTGTTTAA 2109 0.4481 MKEGEKSLDPQLWHACAGSMVQMPQVNSKVFYFPQGHAEHAQTAIDLSTPSLRVPPLIPCRVATVRFMADPETDEVFAKIKLVPLKSSELDQNDNTLEGEVVVENQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKRGIGIGIGGGCEGSSLWSSASSGNGNSNGGPYGALSMFLREENNKLLRNSNGRCSYSSSSSSSRVRAEDVVEAVSMAARNQAFEVVYSPRASTPEFCIKASSVSDAMRIQWCSGMRFKMPFETEDSSRISWFMGTVASVQVADPIRWPNSPWRILQVTWDEPDLLQNVKRVSPWLVELVSNMPIINISPFSPPRKKLRFPQHPDFPQDIQFTSLPTFPGNYIGPNSPMYCLSENAPASIQGTRHAQIGISLSDFHLSNKLQLGLLPTSIHRLDVHNRDMTNHDKSKESLSCLLTMGKSNKSLESSDNNVKTHQFLLFGQPILTEQQISRTGKDSPDETKIKEKCFLGEAKFAVSQHIPPGKASNAAEFSWQIGLETSHCKVFLESEDVGRTLDLSSLGSYEELYRKLANMFDMERSEIFNHVLYRDETSAVKKIGEEPFSEFMKTAKRLTILMDSSSKNITRAWITGSRSGEHGIDASNKTGPLSIFV* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0300 702 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Amo13g0300 702 Gene3D - 110 214 IPR015300 -
Amo13g0300 702 SUPERFAMILY DNA-binding pseudobarrel domain 97 214 IPR015300 -
Amo13g0300 702 CDD B3_DNA 111 212 IPR003340 GO:0003677
Amo13g0300 702 SMART B3_2 112 214 IPR003340 GO:0003677
Amo13g0300 702 Pfam Auxin response factor 287 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo13g0300 702 Gene3D - 588 675 - -
Amo13g0300 702 PANTHER AUXIN RESPONSE FACTOR 2 679 - -
Amo13g0300 702 ProSiteProfiles PB1 domain profile. 590 673 IPR000270 GO:0005515
Amo13g0300 702 Gene3D - 324 397 - -
Amo13g0300 702 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Amo13g0300 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0300 Amo-Chr13 4138673 4142405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0300 3 676 B3 DNA Binding Superfamily AT2G28350 58.274 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo13g0300 B3 1.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0300 - - gmx:100814686 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0300 13 4138673 4142405 Amo13g0300 13 4138673 4142405 ECH
Amo18g0497 18 6430497 6434491 Amo13g0300 13 4138673 4142405 ECH
Amo12g3364 12 122848158 122851774 Amo13g0300 13 4138673 4142405 ECH
Amo18g0497 18 6430497 6434491 Amo13g0300 13 4138673 4142405 PCT
Amo13g0300 13 4138673 4142405 Amo18g0497 18 6430497 6434491 PCT