Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0299 ATGAAGGATTGTTGGTTTTTGGACAACAATTTGAATGGGGTATCGGATGAAGTTTTTGATGTGGTGGGGTTTTTTGATTTCCCAATAGAAGATGTGGAAGATGATGCTGTGGAGGAGGATTGGGGTGCTCAGTTTAAACAACTTGAAGAGCCATCTCTTGGTGTGTTTTCGGTATCACCATCCGGACTGAGTGATAAAACTGAGAATGAGAATCCGAAACTTGGGAGGAGTATCTCTACTCCTGTGGCCGATCCTGCTCGACCTACATACGGCAATACTATTCGGAACCAGAATGTCTCTTTTAATGGGAAAAGGGTGCCCAAGTTCCAAACCTACAGCCCTGTGTCTGTCTTTGAAAGCAGTAGTTCCTCCTCGGTCGAGAACTCCAACTTTGATCTACCTGTCATCCCGGTAAAGCGTCCTCGAGGCAAACGCCGGCCTCTCTCAAGCTTCAGCTTGCTATTATCTGTTCCATTCGTCTCTAACTCCCCAAAAGGTGAGGCAAATGATTTATCTGAATCAAATTTACAAACACAAGCTGATGGTAAATTAATAAGCAGTCTCAAAAAGAAGCAGAGGAGTAAGGATCTACCTTTGCTTTCAGATCATACTGAGAAGAAGGGATCTGCATTGCAAGGATCAGTTACCCACCGAAAATGCATGCATTGTGAGGTGACATCTACGCCGCAGTGGAGAGAAGGACCCATGGGTCCAAAGACACTTTGCAATGCTTGTGGGGTTCGGTATAGGTCCGGCCGGCTCTTCCCTGAATACCGGCCTGCAGCTAGCCCTACGTTTGTACCATCATTGCACTCGAACTCTCACAGGAAGGTCATCGAAATGAGGAGCCGAACTGCGACAGAGACTCTTAAGGGTTCTTCTATGTTGGACAAAGTGTTGTGA 903 0.4629 MKDCWFLDNNLNGVSDEVFDVVGFFDFPIEDVEDDAVEEDWGAQFKQLEEPSLGVFSVSPSGLSDKTENENPKLGRSISTPVADPARPTYGNTIRNQNVSFNGKRVPKFQTYSPVSVFESSSSSSVENSNFDLPVIPVKRPRGKRRPLSSFSLLLSVPFVSNSPKGEANDLSESNLQTQADGKLISSLKKKQRSKDLPLLSDHTEKKGSALQGSVTHRKCMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSLHSNSHRKVIEMRSRTATETLKGSSMLDKVL* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0299 300 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
Amo13g0299 300 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 24 284 - -
Amo13g0299 300 SMART GATA_3 214 264 IPR000679 GO:0006355|GO:0043565
Amo13g0299 300 MobiDBLite consensus disorder prediction 57 76 - -
Amo13g0299 300 Gene3D - 213 264 IPR013088 GO:0006355|GO:0008270
Amo13g0299 300 MobiDBLite consensus disorder prediction 56 97 - -
Amo13g0299 300 PANTHER GATA TRANSCRIPTION FACTOR 24 284 - -
Amo13g0299 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 277 - -
Amo13g0299 300 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Amo13g0299 300 CDD ZnF_GATA 219 266 IPR000679 GO:0006355|GO:0043565
Amo13g0299 300 MobiDBLite consensus disorder prediction 186 213 - -
Amo13g0299 300 MobiDBLite consensus disorder prediction 186 203 - -
Amo13g0299 300 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0299 Amo-Chr13 4117571 4120908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0299 8 284 C2C2-Gata Transcription Factor Family AT1G08000 39.310 2.06e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo13g0299 GATA 7.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0299 - - aprc:113853859 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0299 13 4117571 4120908 Amo13g0299 13 4117571 4120908 ECH
Amo18g0498 18 6445080 6449317 Amo13g0299 13 4117571 4120908 ECH
Amo18g0498 18 6445080 6449317 Amo13g0299 13 4117571 4120908 PCT
Amo13g0299 13 4117571 4120908 Amo18g0498 18 6445080 6449317 PCT