Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0288 ATGTTTTATTCTAATGTAGGATGCTTTCAGAAAGCCTCTTTCTTGTTTGGGATCCAGAGGGAAACTTTTCATGGAAATATTATTCAATTTTCCTTTGCCGAACTAGAAAATGCCACTGAAAACTTTCTAAGCTCCAACCTAATTGGACTAGGTGGAAGTAGTTATGTATACCGCGGTCGTCTGAAAGATGGTAGTATCGTAGCAGTTAAGCGACTAAAAGATCCAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAAGAGGTTATACCTCATTTTTTCATAGTGTTTATGAGTTTAGACTTCAAACTTTCTTATTTCTGTAATTATAATCACTTGGTTTCCTTAGTGCAGATTGAACTATTATCTAGACTTCATCATTGCCATTTGGTGCCTTTGCTTGGATACTGCTCAGAATTAAAAGGGAGACATTTTCAAAGGCTACTAGTATTCGAGTACATGTCTAATGGGAATTTGAGGGACTGGTTAGATGGAGTGTCTGCAAAAAATCTCGATTGGACCACACGCATTACAATCGCAATCGGAGCTGCAAGGGGCTTGGAATATCTCCATGAAGCGGCTGCTCCAAGAATTCTTCATAGAGATGTCAAATCAACAAACATTCTTCTGGATGAAAATTGGCAAGCAAAGATAACTGACCTTGGTATGGCTAAGAACGTGCGAGCGGATGATCACCCCAGCTGTTCGAATTCTCCAGCTAGAATGCAGGGAACGTTTGGATATTTTGCACCCGAGTATGCTATTGTTGGGCGAGCCTCTCTTGAATCGGATGTTTTCAGTTTCGGGGTGGTTCTCCTCGAGCTTATCAGTGGTCGGCAACCAATCTATAAAACTACAGGCAAAGAAGAAAGCCTTGTTATATGGGCTGCGCCCCGCTTACAGGATAGTAGGCGAGTAATATCGGAGTTGGTCGATCCACGACTGAAAGGAGACTTCCCGGAAGAAGAGGTACAGATTATGGCATACTTAGCAAAGGAATGTTTGTTGCTGGATCCTGAAATTCGTCCATCCATGAGTGAGGTTGTTCAAATTCTCTCGAGTATTTCGCCCGACAAATCGAGACGAAGAAGAAACATTCCAGCCAGCCTGTTCCTGGAACCAGTAGAAGCAGAAAGATCTCCAATTCATAATTCATTGCAACAAGACACTGATCATAGATTCTGGGTTGGGAACAAAAACAAAGAAGCTAATGTAGATTCAGCTGAGCGTACAGAGAATTTGACCCTCTTGACATCAAAATCCGAGAGTTGCCACGTGTCAGAAGAGGAAATAGTAGACCTAACTGAGCCGCGATACGAATCATTTTGCATGGCAAATGTCAATTTCTCATGA 1350 0.4215 MFYSNVGCFQKASFLFGIQRETFHGNIIQFSFAELENATENFLSSNLIGLGGSSYVYRGRLKDGSIVAVKRLKDPGGPEADSAFFKEVIPHFFIVFMSLDFKLSYFCNYNHLVSLVQIELLSRLHHCHLVPLLGYCSELKGRHFQRLLVFEYMSNGNLRDWLDGVSAKNLDWTTRITIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNVRADDHPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIYKTTGKEESLVIWAAPRLQDSRRVISELVDPRLKGDFPEEEVQIMAYLAKECLLLDPEIRPSMSEVVQILSSISPDKSRRRRNIPASLFLEPVEAERSPIHNSLQQDTDHRFWVGNKNKEANVDSAERTENLTLLTSKSESCHVSEEEIVDLTEPRYESFCMANVNFS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0288 449 Pfam Protein tyrosine and serine/threonine kinase 117 351 IPR001245 GO:0004672|GO:0006468
Amo13g0288 449 PANTHER OS01G0253100 PROTEIN 117 443 IPR045271 GO:0004714|GO:0006468
Amo13g0288 449 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Amo13g0288 449 SMART serkin_6 42 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0288 449 SUPERFAMILY Protein kinase-like (PK-like) 23 351 IPR011009 -
Amo13g0288 449 PANTHER OS01G0253100 PROTEIN 5 88 IPR045271 GO:0004714|GO:0006468
Amo13g0288 449 Gene3D Transferase(Phosphotransferase) domain 1 157 368 - -
Amo13g0288 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Amo13g0288 449 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 5 88 - -
Amo13g0288 449 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 117 443 - -
Amo13g0288 449 Gene3D Phosphorylase Kinase; domain 1 17 92 - -
Amo13g0288 449 Gene3D Phosphorylase Kinase; domain 1 109 156 - -
Amo13g0288 449 ProSiteProfiles Protein kinase domain profile. 42 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0288 Amo-Chr13 4013364 4015590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0288 6 446 Receptor kinase-like Gene Family AT2G28250 56.629 1.12e-160 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Amo13g0288 PK_Tyr_Ser-Thr 9.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0288 - - gmx:100817870 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0288 13 4013364 4015590 Amo13g0288 13 4013364 4015590 ECH
Amo18g0208 18 2964735 2967351 Amo13g0288 13 4013364 4015590 PCT
Amo13g0288 13 4013364 4015590 Amo18g0208 18 2964735 2967351 PCT