Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0280 ATGAGTAGCTTAAGGCCTGAATTGCATGTTGCACAGCAAATTCGGCGTGACAAGCTCAGATTCCAGAATCTACAACAAGATTTCCCAACAAACCTTGAAGAACAAATTTCACTTCACCAACAAGATTCCAGAATCTACAACATGCTTCAAGATGTTGAACAACCACCACCACAACAACAATCTCTCTATTATGCTTCTTCATCCCCACAACAACAACGTATGATTAATAACAACTGTTACTATTACTCGGGTAATTGCATGGTCAATAATTTTGCAACACTAAGTCCTAGTGTGGCTAATAACCACAACCATATAGTGACGGTTGCACATTATTCTTCTTCACAACAGAATAGTAGTAGCAGTAGTAGTAATAATAATAATGCGGCTTTGCAAGATATTCTGAATCTTAAGCCAGCTTCTAATAACTCAGAAATGCATCATCATCCTTATGTTATTGACAATTATACCCCTACTGCTGCTGCTGCTGGTGGTTGGAATAATCATCATCAGGGGTTGTCCTTATCACTCTCATCATCATCACCATTAAATGTTCATGTGAAATCTTCTACTACTACTAATCCAATGATGATGATGAAGCCATCAACTACTTCTCCTGCATCATCAAGTTACTATTACAGAAACAGTGTTGGTCCACTAGGTCCATTCACGGGATATGCAACAATCTTAAAGAGTTCAAGGTTCTTGAAGCCATGTCAAAAGTTGTTAGATGAATATTGCCGCCGCCATTCCGCTCCATCAACATCAGAATGGCCTTCTACTACTACTTGTGCTGATGATGATGATGATAACGATGATGATCGAAGTGATCATGGGTTACTTGTTTCTGAAAAGGGAGGTGGTAGTAGTAGTAATAATAATAATAATGTTGGAGCAGCAGGTTCTTCTTCATCTTCTTCCATGTTCCATGCCCCTTCTTCTTCTTCTCCTTCTCGGCCAGAGTGCCAAAAGAATAAGGCCAAACTACTGTTCATGCAAGAAGAGGTTACAAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTGGTTTCATCCTTTGAGACAGTGGCAGGCCTCAATTCTGCAACCCCATACGTTTCCTTGGCGCTCAAGTTAGTATCAAAGAACTTCAAGTCCCTAAAGAACTCCATCTCCGGTCAGCTCAAGCTTATATGTCAAGCCTTGGGAGAGGATTATCCGACAATGCCGCCGGCCCCCGCGAGTACTAGTAACCGATTCGAGTCGAACATGGCGAGGTTACAGAGGAACAAACCCGGTGGTGGTGGGGGTAATATGGACTTTGAACCTCAACAACATGTTTGGAGGCCGCAGCGCGGCTTACCGGAGCGCGCCGTGGCCATTCTTAAATCATGGTTGTTTGAGCATTTTCTTCATCCGTACCCCACGGACACAGATAAACATATGCTAGCTACTCAAACTGGTCTATCAAGAAATCAGGTATCAAATTGGTTCATAAATGCTAGAGTCCGGGTATGGAAGCCAATGGTTGAGGAAATTCACATGCTCGAAACAAAAGGCGCCAATCAGATTTCTAGCAATAGAATGGGGGAGGGAAATTCAGCCTCCAATGAAAGTAGCAACCATGCCAAAGTATTAGTTGATCAACCTCTCGCTATCTCGGAGAGGCAAATTCGGTGTTTGGAAATGGGATCATCATCATCATCCTTGGCCAATGATGAAGAGGTACAATGGAGTCAAGAGAAGAGGTCTAAATTGGAATGCATGGATGGGACATTGATGGGTTTGATGCCGTTCCGCGGCGCCGGCGTCGGTGTCGGCGCCGAGGTTCGGGGACTTGGACCTGTGTCACTAACTTTGGAATTAAGGCATGGAGTTGAAGGATCACAACAACAACAACAAGAGGAGCAGCTTAGACACCACTTTGGAGGGCACATGATTCATGATTTCGTAGGGTAA 1938 0.434 MSSLRPELHVAQQIRRDKLRFQNLQQDFPTNLEEQISLHQQDSRIYNMLQDVEQPPPQQQSLYYASSSPQQQRMINNNCYYYSGNCMVNNFATLSPSVANNHNHIVTVAHYSSSQQNSSSSSSNNNNAALQDILNLKPASNNSEMHHHPYVIDNYTPTAAAAGGWNNHHQGLSLSLSSSSPLNVHVKSSTTTNPMMMMKPSTTSPASSSYYYRNSVGPLGPFTGYATILKSSRFLKPCQKLLDEYCRRHSAPSTSEWPSTTTCADDDDDNDDDRSDHGLLVSEKGGGSSSNNNNNVGAAGSSSSSSMFHAPSSSSPSRPECQKNKAKLLFMQEEVTRRYKQYHQQMQMVVSSFETVAGLNSATPYVSLALKLVSKNFKSLKNSISGQLKLICQALGEDYPTMPPAPASTSNRFESNMARLQRNKPGGGGGNMDFEPQQHVWRPQRGLPERAVAILKSWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGANQISSNRMGEGNSASNESSNHAKVLVDQPLAISERQIRCLEMGSSSSSLANDEEVQWSQEKRSKLECMDGTLMGLMPFRGAGVGVGAEVRGLGPVSLTLELRHGVEGSQQQQQEEQLRHHFGGHMIHDFVG* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0280 645 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 619 - -
Amo13g0280 645 SMART prehox3 223 386 IPR006563 -
Amo13g0280 645 Pfam Associated with HOX 228 385 IPR006563 -
Amo13g0280 645 Gene3D - 444 506 - -
Amo13g0280 645 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 28 619 - -
Amo13g0280 645 SMART HOX_1 441 505 IPR001356 GO:0003677
Amo13g0280 645 CDD homeodomain 441 502 IPR001356 GO:0003677
Amo13g0280 645 Pfam Homeobox KN domain 458 497 IPR008422 GO:0003677|GO:0006355
Amo13g0280 645 ProSiteProfiles 'Homeobox' domain profile. 438 501 IPR001356 GO:0003677
Amo13g0280 645 SUPERFAMILY Homeodomain-like 443 507 IPR009057 -
Amo13g0280 645 MobiDBLite consensus disorder prediction 249 322 - -
Amo13g0280 645 MobiDBLite consensus disorder prediction 284 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0280 Amo-Chr13 3859242 3866916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0280 160 510 Homeobox Transcription Factor Family AT4G34610 40.510 5.25e-64 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo13g0280 POX 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0280 - - aip:107629241 1003.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0280 13 3859242 3866916 Amo13g0280 13 3859242 3866916 ECH
Amo18g0509 18 6666379 6672468 Amo13g0280 13 3859242 3866916 PCT
Amo13g0280 13 3859242 3866916 Amo18g0509 18 6666379 6672468 PCT