Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0264 ATGGTGTCGGACGCAAGCAAGAAGAAGGCTGCGCAGAAGAAGATCGCCGCCGCAGCTAAGAGAGGCGGCAAGGCTGCTGCTGCCGCGGTTGCTTCCAAGGTGGCGGCGGTTGACGCTCATAAGGCGGCTGTTAAAGTGGCGAATGAGATCGCCGACCTTCGTATATCGGATCGTACTTGTACTGGTGTCCTCTGCTCCCATCCTCTGTCCAGGGATATTCGGATAGAATCTCTATCGGTTACATTCCATGGACATGACCTAATAGTTGATTCTGAATTGGAGTTAAACTATGGAAGACGCTATGGTCTACTTGGATTAAATGGATGTGGAAAATCTACTTTGCTTACGGCAATAGGTTGCCGTGAACTTCCGATTCCTGAGCACATGGATATCTATCACCTTAGCAGGGAAATTGAAGCCACAGATATGTCTGCATTGGAGGCAGTCATAAACTGCGACGAGGAAAGATTGAAGTTGGAAAAAGAAGCGGAAGCTTTGGCTGCTCAGGACGATGGTGGTGGCGAAACTCTTGAACGGATTTATGAACGATTAGAGGCCCTAGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAAATTTTACATGGTCTCGGTTTCAACAAGGAGATGCAAGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGAATTGCACTAGCTCGAGCTCTATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTTGAGGAGAGCTTGAAGAAGTTTGACCGTATACTGGTTGTGATTTCACACTCTCAGGACTTCCTGAATGGTGTCTGCACAAATATTATCCACATGCAAAACAAAAAACTAAAGCTTTACACTGGTAACTATGACCAGTATGTTCAGACTCGTTCCGAGTTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAAGAGCAGATTGCCTCAATGAAGGAATATATTGCTCGATTTGGCCACGGTTCGGCAAAACTAGCTCGCCAAGCACAAAGTAAAGAGAAAACACTGGCTAAAATGGAACGGGGTGGACTTACCGAGAGAGTGGTTAAAGACAAAGTCTTGGTGTTCCATTTTACTGATGTGGGAAAACTTCCCCCTCCTGTTCTTCAGTTTGTTGAGGTGACGTTTGGTTATACCCCTGATAATCTCATCTACAAGAATATCGACTTTGGTGTTGATTGTGACTCTAGGGTAGCCCTGGTTGGACCCAACGGTGCCGGAAAGAGTACACTACTGAAGCTCATGACTGGTGACTTAATTCCCAATGATGGCATGGTCCGGCGTCACAACCATCTTCGAATTGCTCAATTTCACCAGCACTTGGCTGATAAGCTGGACATGGAGATGTCTGCACTCCAGTTTATGATGAAAGAGTACCCTGTAAATGAGGAAGAGAAGATGAGAGCAGCTATTGGGAAGTTTGGGCTGTCAGGTAAAGCTCAGATAATGCCTATGAAGAACTTGTCTGATGGGCAGAGGAGCCGTGTGATATTTGCATGGCTAGCCTGGAAGCAGCCTCATTTGCTACTCCTGGATGAGCCAACTAATCATTTGGATATCGAGACAATTGACTCATTGGCCGAGGCATTGAATGAATGGGATGGCGGCATGGTGCTCGTTAGCCATGACTTCAGGCTCATAAACCAGGTGGCCCATGAGATATGGGTGTGTGCAAATCAAACTATCACCAGATGGGATGGTGATATCATGGACTTCAAGATGCATCTCAAATCACAGGCAGGCTTATCTGACTGA 1800 0.4639 MVSDASKKKAAQKKIAAAAKRGGKAAAAAVASKVAAVDAHKAAVKVANEIADLRISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLSREIEATDMSALEAVINCDEERLKLEKEAEALAAQDDGGGETLERIYERLEALDAATAEKRAAEILHGLGFNKEMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTERVVKDKVLVFHFTDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDCDSRVALVGPNGAGKSTLLKLMTGDLIPNDGMVRRHNHLRIAQFHQHLADKLDMEMSALQFMMKEYPVNEEEKMRAAIGKFGLSGKAQIMPMKNLSDGQRSRVIFAWLAWKQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCANQTITRWDGDIMDFKMHLKSQAGLSD* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0264 599 CDD ABCF_EF-3 384 576 - -
Amo13g0264 599 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 73 313 IPR003439 GO:0005524
Amo13g0264 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 580 IPR027417 -
Amo13g0264 599 Coils Coil 291 311 - -
Amo13g0264 599 Gene3D - 73 337 IPR027417 -
Amo13g0264 599 Pfam ABC transporter 91 245 IPR003439 GO:0005524
Amo13g0264 599 Pfam ABC transporter 400 531 IPR003439 GO:0005524
Amo13g0264 599 PANTHER - 1 599 - -
Amo13g0264 599 CDD ABCF_EF-3 73 290 - -
Amo13g0264 599 Gene3D - 349 597 IPR027417 -
Amo13g0264 599 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524
Amo13g0264 599 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 599 - -
Amo13g0264 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 320 IPR027417 -
Amo13g0264 599 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 599 IPR003439 GO:0005524
Amo13g0264 599 Coils Coil 149 169 - -
Amo13g0264 599 Pfam ABC transporter 284 357 IPR032781 -
Amo13g0264 599 SMART AAA_5 409 595 IPR003593 -
Amo13g0264 599 SMART AAA_5 97 299 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0264 Amo-Chr13 3701104 3705387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0264 384 564 Calmodulin-binding Proteins AT2G36910 25.118 5.51e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0264 K06185 - gmx:100809491 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0264 13 3701104 3705387 Amo13g0264 13 3701104 3705387 ECH
Amo18g0522 18 6843850 6847952 Amo13g0264 13 3701104 3705387 PCT
Amo13g0264 13 3701104 3705387 Amo18g0522 18 6843850 6847952 PCT