Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0258 ATGGGAAGAGCTCCATGTTGTGACAAGGCAAATGTGAAGAGAGGACCATGGTCACCTGAAGAAGACTTAAAGCTCAAAGAATACATACACAAGCATGGCACTGGTGGCAATTGGATTGCTCTTCCTCAAAAAGCTGGCCTTGTTGATCCTATTTCACTTCCTTCAACTGAATACTATGCAAACACAACAACAACAACCTCAGTTCCATTTTACCAGCACCAAGTAGATTCCATTGTTAGCCCCAGCAGCATGCAACAAAATTATCACATGTTTGGAAGTGAAGGTAGTTGCAGTTCCTCTGATAATGGAAGCAGTATCAAGCAAGAGGAAATTGGGTATCATCATCAAGGATCATACAACAACATTATTGCATTTGATGACTTCAACAACAACAATAAGTTTCTTGTTATGCCTAGTAGTTTCAATGATAATAATAATAATAGCATTGTTAATTATGATGGTGGTGAAAATATTACTGAATATGATCTTGAGGAAATTAAGCAATTGATTAGTGTTAGTAGTAGTGTTGATGAAATCAAGGAGGAGAAACAACCTATTTACTATTATTATTGA 573 0.3647 MGRAPCCDKANVKRGPWSPEEDLKLKEYIHKHGTGGNWIALPQKAGLVDPISLPSTEYYANTTTTTSVPFYQHQVDSIVSPSSMQQNYHMFGSEGSCSSSDNGSSIKQEEIGYHHQGSYNNIIAFDDFNNNNKFLVMPSSFNDNNNNSIVNYDGGENITEYDLEEIKQLISVSSSVDEIKEEKQPIYYYY* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0258 190 SUPERFAMILY Homeodomain-like 8 46 IPR009057 -
Amo13g0258 190 PANTHER OS09G0431300 PROTEIN 1 47 - -
Amo13g0258 190 CDD SANT 16 40 IPR001005 -
Amo13g0258 190 Gene3D - 11 56 - -
Amo13g0258 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 35 IPR017930 -
Amo13g0258 190 Pfam Myb-like DNA-binding domain 14 44 IPR001005 -
Amo13g0258 190 PANTHER TRANSCRIPTION FACTOR RAX3 1 47 - -
Amo13g0258 190 ProSiteProfiles Myb-like domain profile. 9 44 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0258 Amo-Chr13 3642597 3643883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0258 1 47 MYB Transcription Factor Family AT2G36890 89.362 1.17e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo13g0258 Myb_DNA-binding 3.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0258 K09422 - twl:119986523 103.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0258 13 3642597 3643883 Amo13g0258 13 3642597 3643883 ECH