Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0248 ATGATGATGATGATGGAATTCCAGAACCGCAGAGTGCTACTACTCCTCAACAAGGATGTTCCAATATCTTCACCGCCGCCGCCGCAGCCGCCAGCGTCGTCATCACCGGTGATGGCGATGTATGGATCATCGTCATTGCAAGTACCAGCTCGTCCGATCTTCAGTTCAAACGTAGCCTACGCCTTCATCATCCTCCTCACCACGCTGTTCTTCCTGGCCTTCATCCTCCTCTTCCTCCGCCAATTCTCGTCGTCCGGCAGCAGAAGCCGTTGCTCGGAGGAAACGACGGAGAAGTGGGCGCTGCCGACAGTTGCGTACAGTAGGGGGAAGAGGAAGGTGAAAGAGCAGGAAGAGGAGTGCGTGATATGTTTGGAAGAGCTTCGCGAGGGTGAAACGGTAAAAATGATACCTCACTGCAAGCACGTGTTCCATCCTAACTGCATTGACACGTGGCTCCTCACTCACGTGACATGCCCCGTGTGCAGATGCCCCAAGTTACAAGAGTCTCAAACTGAAAGAGCGGTGAGTAGTGATGAGAGAAGAGAAGTAACTGGGTTGAGGAGATCACTCAGCTTCTGA 579 0.5302 MMMMMEFQNRRVLLLLNKDVPISSPPPPQPPASSSPVMAMYGSSSLQVPARPIFSSNVAYAFIILLTTLFFLAFILLFLRQFSSSGSRSRCSEETTEKWALPTVAYSRGKRKVKEQEEECVICLEELREGETVKMIPHCKHVFHPNCIDTWLLTHVTCPVCRCPKLQESQTERAVSSDERREVTGLRRSLSF* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0248 192 PANTHER RING FINGER DOMAIN-CONTAINING 54 165 - -
Amo13g0248 192 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Amo13g0248 192 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 54 165 - -
Amo13g0248 192 SMART ring_2 120 161 IPR001841 -
Amo13g0248 192 Pfam Ring finger domain 119 162 IPR001841 -
Amo13g0248 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 166 IPR013083 -
Amo13g0248 192 SUPERFAMILY RING/U-box 114 166 - -
Amo13g0248 192 CDD RING-H2_PA-TM-RING 119 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0248 Amo-Chr13 3510506 3511153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0248 54 166 C3H Transcription Factor Family AT2G27940 36.879 1.48e-25 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0248 - - aip:107634124 309.301