Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0247 ATGGCTATTGCTGGTCTGCACAATGTATCTGTACTCGAGTCTTCTTTCCTGAGGGATTCCCATTCCCAGTCATCCAGCAGGCGGGGAGATGGAAGGAGGGGAGGAACCCGGTCATCCGCACTCTTGCAAATGTGGCGAGAGCTTGAAGATGAACATGCGGTGAATCAGGTGCAAGGAAGGCCTGGTGAAGTACTACTTGAACAAAGGAGTGATGGGTTGATTTCTGACCTCTCACAGGCAGATTCTCCAGGTAGCCATGAGAGAGGACAGGATCGAATGCTAGAGGACGCAGTTTTGGGCGACACTGAATCTGAAACATGGTCACAGTCACAAAGTCAGAATGAATCCCATTACGATCATGAGGATTTAAACAACTCCAGCTGTGAAAACTCCTCTGATTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTTAGGGAATGGATGAGCAGTGGTGCTGGGGATCATGGATCAAACATTTCCCGGAGAAATAACAGTTCAAGGGGAGAATGGCTTGGTGAAACTGAGCAGGAAAGGGTGAGAATAATAAGGGAGTGGGTACAAATGAGTAGCCAGCACAGAGGTGTTTCTTCTGGGGAAACCAGGGAAGAGCAATCTGCTGAAATTGGTACACAAATTGAACGTGTTCGTGATGGCTTTGTTGTTAACCAGGGCGAGGGCCAGACTGAACATTTTCGTAGGGGAATCCGTAAATTATGCGGACGACAGGTTATGCTTGATATGCTGAAGAAGGCTGAGATGCAAAGGCAAAGAGAAATTCAAGAGTTGTTGAACCATCGGGCAGTATCTCATTTCCCTCATCGTAATCGCATTCAGGCATTGCTTAGAGGCTGGTTCTTGAGAAATGATAGATCTGTTGATAATAACAGGTCCACTTCTGTTGCTGAAAGTGAACTAGGTTTATTGAGGCAAAGACAAACTGTATCAGAACTAAGGGAAGGATTCTTCTCCAGAAAGGATAAAACTGGTTGCAGTCAAGCAACTGGCAACGTATCTGATATGTCACCTAACAGTGATATTGAATTTAATACGATTGAACAAACTGGTGCTAGCAATTCACATGTGGTCCCCACTCTGAATTCTGAACGGTCTGAATCTAATACCAGAAGAAATGATGGACTTGAGATGTTGGGGGGCCAGAATTGTTTGCAGGAAACAATGTCTGACAATCCAGATCAACAAGATACTACTGGTCATGTAGAAGGAGCTCAGTTACAGAATTTGCAATTTGAACCAGTAAATCAGCTATCATCCAGTGTGGCCGTTGAAAGAAGAGATAGCACTGGGCAAAATGTTGATGTGAACCATGTGATGCCAGTTGAGGATACTGCTAGTGATCATGTGCAGCAAAGTTTGCAAACTGAAAATCCATTTCAGAGTGCTATGCAGGAATTCACTGAGGCATACAATGATCAACTTCGATCGGGTGATATAAGTAATGGTGTAAATGACTCATCAAACCCCAACCACCCCATGGAGGAAAATATTGTTGATATGAATCGGAATGAACCCGCTGCTCTGGTAGGAGAACAGCTGGAAGAAGATATTGAAAATGAAGGAAGTGTCTGGAATCAGAGTAACCGTGAATGGAGAAATAGCACGGAGGAAGGTGTAGATGATAATCAAGTCAGCAGTACATCAATGCAGTGGCCTGAAAATGAATTTGGAAATGAGGATGGAGAAAACTCTCGGCTGCAAGAAGGTCCTGAAGTCTGGCAAGAGGATGGTGGCTTCCAAGAGGCTGTAGAAAATTGGTTGGGGGCTCCTTCTGATCTTGAAAGTGCTCCAGTCGGTAGGATTCATGGATTTTACTTTCCAGACGACGACAATGTATATAGTGTTGAACTCAGGGAACTGCTTAATAGGAGAAGTGTCTCCAACCTCCTCCGTAGCAGTTTCCGCGATAGTCTTGACCAGTTGATACAATCATATGTTGCAAGGCAAGGCCATAATCAGATGGAGTGGGAGCTACAAGAAACAACCCCGTCTTCTGCCTCTGTGGAACAGGACCTTGAACAGCAGAGTAGGGATCAGATTGTTGGTCAGGAGGGTACTGTTAATAGTCCACATGACCTACCTTCTTTACCTATTCCTCCTCCTTTGCCTCTTTGGGACCGGCACCCTCGCCGTGACAGCTGGTCACAGTCGCAGAGTGACATGAATAATCAGCATCTAGGAGGAATTGATTGGGAGGTTGTCAATGACTTGAGAATTGACATGTCTAGACTGCAGCAAAGGATGAACAATATGCAAAGAATGCTGGAGGCTTGTATGGATATGCAGCTGGAGTTGCAGCGTTCAATAAGGCAAGAAGTTTCTGCTGCCCTAAATCGTTCGACTGGTTCATCAGGAACAAATGAGTTCGAGTCATCAGATGAATCCAAATGGGAATGTGTGAGGAAAGGGCTTTGCTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGTACATGTTCTAAATGTGCCAATGAGTTGCTTCAAAGTAAAAGGAAGTGCCCGATGTGTCAAGCCCCCGTGGTGGAGGTTATACGTGCTTATTCTATACTATAG 2595 0.4486 MAIAGLHNVSVLESSFLRDSHSQSSSRRGDGRRGGTRSSALLQMWRELEDEHAVNQVQGRPGEVLLEQRSDGLISDLSQADSPGSHERGQDRMLEDAVLGDTESETWSQSQSQNESHYDHEDLNNSSCENSSDLGEVERERVRQIFREWMSSGAGDHGSNISRRNNSSRGEWLGETEQERVRIIREWVQMSSQHRGVSSGETREEQSAEIGTQIERVRDGFVVNQGEGQTEHFRRGIRKLCGRQVMLDMLKKAEMQRQREIQELLNHRAVSHFPHRNRIQALLRGWFLRNDRSVDNNRSTSVAESELGLLRQRQTVSELREGFFSRKDKTGCSQATGNVSDMSPNSDIEFNTIEQTGASNSHVVPTLNSERSESNTRRNDGLEMLGGQNCLQETMSDNPDQQDTTGHVEGAQLQNLQFEPVNQLSSSVAVERRDSTGQNVDVNHVMPVEDTASDHVQQSLQTENPFQSAMQEFTEAYNDQLRSGDISNGVNDSSNPNHPMEENIVDMNRNEPAALVGEQLEEDIENEGSVWNQSNREWRNSTEEGVDDNQVSSTSMQWPENEFGNEDGENSRLQEGPEVWQEDGGFQEAVENWLGAPSDLESAPVGRIHGFYFPDDDNVYSVELRELLNRRSVSNLLRSSFRDSLDQLIQSYVARQGHNQMEWELQETTPSSASVEQDLEQQSRDQIVGQEGTVNSPHDLPSLPIPPPLPLWDRHPRRDSWSQSQSDMNNQHLGGIDWEVVNDLRIDMSRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGTNEFESSDESKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSKRKCPMCQAPVVEVIRAYSIL* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0247 864 ProSiteProfiles Zinc finger RING-type profile. 812 851 IPR001841 -
Amo13g0247 864 MobiDBLite consensus disorder prediction 16 37 - -
Amo13g0247 864 MobiDBLite consensus disorder prediction 540 572 - -
Amo13g0247 864 CDD mRING-HC-C3HC5_NEU1 812 850 - -
Amo13g0247 864 Pfam Zinc finger, C3HC4 type (RING finger) 809 856 - -
Amo13g0247 864 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 863 - -
Amo13g0247 864 SUPERFAMILY RING/U-box 811 857 - -
Amo13g0247 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 862 IPR013083 -
Amo13g0247 864 MobiDBLite consensus disorder prediction 540 561 - -
Amo13g0247 864 MobiDBLite consensus disorder prediction 100 137 - -
Amo13g0247 864 PANTHER PROTEIN, PUTATIVE-RELATED 1 863 - -
Amo13g0247 864 MobiDBLite consensus disorder prediction 155 172 - -
Amo13g0247 864 Coils Coil 741 768 - -
Amo13g0247 864 MobiDBLite consensus disorder prediction 149 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0247 Amo-Chr13 3504050 3509087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0247 812 858 C3H Transcription Factor Family AT3G06140 42.553 1.30e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0247 - - gmx:100801329 1157.13