Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0246 ATGGCGAACTGTGCGGATTCGGAGCAGTTCCTGGTGCTGTCTAGTATCCGGACGGGTCTCAAGAGAGAGTTTGCATTCGCCATGAAAGCTCAATCCGAGATCTGTGGGTCACTGGGCCGGACCAGGGCCTCCAAGAACGGGAATGCGGTTCAGGTCGTGAAAAGCCCGGTCAAAAAGCGGTCCAGGAAGTCAAGTTCGGGGGAAGGGAACAAGAGCGAGCCGAAAAGTGAGGACTTGAATTGTGGGGTGGTGAAAAGCGAAGATGGTGGTGGTAGAGGTGATGTTATGAGTGAAGAGGAGGCAAAGAGTGATGTTGTTGATGTGGAGGAACTAAAGAATGAAGGTGTTACGGTGGTGGTGGATGAAACGGAGAAGGTTGGTTGTGAAGGTGACGCGAAGGAGGGTGGTGAGGTATGTTGTTCTAAGGAAGATGGTGTTGTTGGTGGGGCAACACCGGTTTCAATTACAGGTGATAGTGGTGGTAGTTTGAAGGGTTCTGTTGTTTCTATGGAGAAGCCATTTAGGAGGTTTACTAGGTCTCTACTAAAGAGAAAGTTGGAAGAAGATGTTAGTGGCGCAAAGGATGGGAATGATAAGGTAAATAACAATGCCGAAGCTGTTGAAGTTGGTGGTAATAATAAGAAGCGTGCTAATGATAGTGGCAAGGATGTTGAAGTTGGTGATGATGTCAAGGAGGGAATTGAAGATGGTGCATTGGTTGCTGTGTCCAAGGCTAGTACTAAGAGGTGCCCAACAAGTCTGAAGGAGCTTCTAGCCACGGGGATTCTTGAGGGTTTGGCAGTGAATTATGCTCGCAGTGTGAAGGCAATCAAGGCTGGAGAAGCAGAGCTTCGGGGAGTGATTAATGGCAATGGGATTGTGTGCCATTGTGAGGATTGCCATGGTGTTGAGGTTGTGACGCCCACCTTGTTTAAGCTTCATGCCAGTCGTTTAAACAAGTGCCCCCCAGAGTATATATACCTTGAGAATGGGAGTACTCTTCATGACATCATGAATACATGTTTGGATGTACCATTAGAAACCTTGGAAGAAGTTATCCAAAAAGTTATTGGAGGCTTCACCATAAAGAAATCTACCTTTTGTTTTAACTGCAGAGATGCCAATGTTGTGTCGAGACTATTATGCAATTCATGCATGGAGTCAAAGGAATGCCAACCTAACCTCCCCACTCAAACAACTGACACTAGCAATTGCAATGTTTCACATGCAGTTCAATCCAGATCCCCAGAACCCATCGTGGTTCAAAAGTCAATAAACAATGGAATGAAGCACAGCACATCTCGTGATAAGAGTGACGGAAAAGTAACTAAGAAGGATCTACGCTTGCATAAGTTGATCTTTGAAGCAGATGTGTTGCCAGATGGAACAGAAGTAGCATACTATGTTCGCGGAAAGCGACTGTTGGATGGTTACAAGCAGGGTTTTGGAATAGTTTGTAGCTGCTGTGACAAAGAGATTAGTCCCTCCCAGTTTGAAGCTCATGCCGGTTGGGCATCACGTAGGAAACCTTACCTCCACATATACACATCTAATGGAGTCTCACTCCATGAGCTGTCCATCAATTATTTAAAAGAACGGAAGTTTTCCTCCAGTGATAATGATGACCTCTGCAGTATATGTTCTGATGGAGGGGATCTTTTGTGTTGCGATGGATGCCCAAGAGCATTTCACATCGGTGAAGTCCCAGAACTATTTGACAACTCAGGTCTATTTATGTTTATAGAAGAATTGTTTCTGGCTGAACACAGAATTAATTGTGTTCCTCTCCCCTCTGTTCCAACTGATACCTGGTATTGTAAATACTGTGAGAATGTCTTTCAGAAAGACAAATATGTGGCGCATAACGCAAATGCGTTGGCAGCTGGAAGGATTGCAGGCATTGATCCTTTAGCACAGATACATGAAAGGTGTATTCGCATTGTTAAAACTCACCAGGTTCACCATGAGGGATGTGTACTGTGTAGGCAACCATATTTTAGCAAAATCTTTAGTCCCCGAACTATGATGATTTGTGATCAGTGTGAGAAGGAATATCATGTTGGGTGTATGAAGGATCATAACATACAAAATCTAGAGGCGTTGCCAGAAGGGAATTGGTTCTGCTGCTCAGAGTGCAATGGAGTTCATGCTGCTTTGGTAAATTTAGTGGCTGGTGAGGAAGAGAATCTTCCAGATTCCCTCCTTAGCTTGATTAAGAGAAAGCATGAAGAAAAAGGTTTAGAAACCGGGGCTGCTCTTGATGTTAAATGGAAGGTTCTGAACTGGAATCTTATTGCTTCTGACAAGACCAGAAAATTGCTTTCGGAAGCTGTTGCTATCCTCCATGAGCGTTTCGGTCCTATAAATTCTGATTCGAGAGCCGATTTCATTCCAGCAATGATTTATGGGAGGAAAATTGGGGATTATGATTTTCGCGGAATGTACTGTGCAGTTCTCATTGTCAACCAAGTAATTGTATCTGTTGGAATATTTCGCATCTTCGGGCATGAAGTGGCAGAGCTTCCCTTAGTGGCGACGCCTACAGACTGCCAAGGACAGGGTTACTTCCAGTGCCTCTTTTCTTGCATTGAGAGGGTGCTTGCCTCTTTAAAAGTGAAACATTTAGTCCTACCAGCTGCGGAAGAAGCTGAATCAATATGGACCAATAAATTTGGGTTTACAAGGGTTGACCAAGATGAGATAAATGAATACAGGAGACGTCTCCGAATGATGATATTTCAAGAGACTCCCTTACTGCAGAAGCCGGTTTCTGCACTCGCAAGTACTTAG 2790 0.4444 MANCADSEQFLVLSSIRTGLKREFAFAMKAQSEICGSLGRTRASKNGNAVQVVKSPVKKRSRKSSSGEGNKSEPKSEDLNCGVVKSEDGGGRGDVMSEEEAKSDVVDVEELKNEGVTVVVDETEKVGCEGDAKEGGEVCCSKEDGVVGGATPVSITGDSGGSLKGSVVSMEKPFRRFTRSLLKRKLEEDVSGAKDGNDKVNNNAEAVEVGGNNKKRANDSGKDVEVGDDVKEGIEDGALVAVSKASTKRCPTSLKELLATGILEGLAVNYARSVKAIKAGEAELRGVINGNGIVCHCEDCHGVEVVTPTLFKLHASRLNKCPPEYIYLENGSTLHDIMNTCLDVPLETLEEVIQKVIGGFTIKKSTFCFNCRDANVVSRLLCNSCMESKECQPNLPTQTTDTSNCNVSHAVQSRSPEPIVVQKSINNGMKHSTSRDKSDGKVTKKDLRLHKLIFEADVLPDGTEVAYYVRGKRLLDGYKQGFGIVCSCCDKEISPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSINYLKERKFSSSDNDDLCSICSDGGDLLCCDGCPRAFHIGEVPELFDNSGLFMFIEELFLAEHRINCVPLPSVPTDTWYCKYCENVFQKDKYVAHNANALAAGRIAGIDPLAQIHERCIRIVKTHQVHHEGCVLCRQPYFSKIFSPRTMMICDQCEKEYHVGCMKDHNIQNLEALPEGNWFCCSECNGVHAALVNLVAGEEENLPDSLLSLIKRKHEEKGLETGAALDVKWKVLNWNLIASDKTRKLLSEAVAILHERFGPINSDSRADFIPAMIYGRKIGDYDFRGMYCAVLIVNQVIVSVGIFRIFGHEVAELPLVATPTDCQGQGYFQCLFSCIERVLASLKVKHLVLPAAEEAESIWTNKFGFTRVDQDEINEYRRRLRMMIFQETPLLQKPVSALAST* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0246 929 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 764 915 IPR000182 GO:0016407
Amo13g0246 929 PANTHER AUTOIMMUNE REGULATOR 592 922 - -
Amo13g0246 929 PANTHER AUTOIMMUNE REGULATOR 1 565 - -
Amo13g0246 929 SUPERFAMILY FYVE/PHD zinc finger 652 711 IPR011011 -
Amo13g0246 929 Coils Coil 183 203 - -
Amo13g0246 929 Gene3D - 760 921 - -
Amo13g0246 929 PANTHER AUTOIMMUNE REGULATOR 1 565 - -
Amo13g0246 929 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 534 614 IPR013083 -
Amo13g0246 929 Pfam Tify domain binding domain 286 341 IPR032308 -
Amo13g0246 929 Pfam Tify domain binding domain 477 526 IPR032308 -
Amo13g0246 929 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 812 902 IPR016181 -
Amo13g0246 929 MobiDBLite consensus disorder prediction 61 82 - -
Amo13g0246 929 MobiDBLite consensus disorder prediction 38 104 - -
Amo13g0246 929 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 714 IPR013083 -
Amo13g0246 929 SMART PHD_3 657 713 IPR001965 -
Amo13g0246 929 SMART PHD_3 543 610 IPR001965 -
Amo13g0246 929 PANTHER AUTOIMMUNE REGULATOR 592 922 - -
Amo13g0246 929 SUPERFAMILY FYVE/PHD zinc finger 538 565 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0246 Amo-Chr13 3479365 3484555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0246 251 925 PHD Transcription Factor Family AT2G36720 38.926 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0246 - - lang:109351691 1037.71