Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0239 ATGGATTACAAGGAAGACTATTATTTGTCCAACACTAGCAATGATAATTGTAATGTTGTTCATCATGATGCTACCCATCATATAGCCAAGGGAAAACGGACCAAAAGGTTGAGGCTTTTGTGTGGCGGCGCAACCGTCATCATGCCGGCCTCTAGCTGTTCTAGCGCTTCCGGCGATGATCACGGCTCGTTTTCGATTTCTTCCACAACCAATCAAGAGGAAGAAGACATGGCTAATTGCTTGATTCTTCTTGCTCAAGGAGGAGGAGATTCTCATCAAAAACCGCCACAAGTTGATGATCAAGATGAAGATGATAACAAGAAGATTATTGAAATCAAGAGTAGGAAATTCTCGGAGATTGAAACCGCCACCATAAACAACAACAAGGTTGGTTTCTATATTTATGAGTGCAAGACTTGTAACCGAACCTTCCCTTCCTTTCAAGCCTTGGGTGGTCATAGAGCCAGTCACAAGAAGCCTAAGCTCACAACAATCCCTGCCGCCGAGGACAAGAAACCACCACCACCGTCTCCGCCACCTCCACTGCCTCCCCCACCACCGCAGCAACTTATGATGAAGACCAATTATGACCATCATCTTCATCATAGCCAGCAGATTGAAACTGTCCCTCCAAATAATAATAATCCAATAATTTCTCTACAATTTGGGAGTGGGCAAAAAGGTAATTTCCACGGGAACAACAACAACAAGCCCAACAAGATTCACGAGTGCTCCATATGTGGCTCCGAATTCACATCCGGCCAAGCACTGGGTGGACACATGAGAAGGCATAGGGCTACAGCGGCCGCAGCCGCCAATAGTACTGCTCAGGCCAATGTTGGCCTAAGCAGAATTGAGGCAACTTCTACTGTTATAACTACAACAGTAGAAGTTCAGCCTCGAAATATTCTAGAATTGGATCTCAACCTTCCGGCTCCGGAGGAAGACCTCCGGGAGCCAAAGTTTCAGTTTGCTACCGCAGCAACTAAGAAATCTATGGTGCTCTCAGCTGCTCCGGCTTTGGTGGACTGCCATTATTAG 1041 0.463 MDYKEDYYLSNTSNDNCNVVHHDATHHIAKGKRTKRLRLLCGGATVIMPASSCSSASGDDHGSFSISSTTNQEEEDMANCLILLAQGGGDSHQKPPQVDDQDEDDNKKIIEIKSRKFSEIETATINNNKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLTTIPAAEDKKPPPPSPPPPLPPPPPQQLMMKTNYDHHLHHSQQIETVPPNNNNPIISLQFGSGQKGNFHGNNNNKPNKIHECSICGSEFTSGQALGGHMRRHRATAAAAANSTAQANVGLSRIEATSTVITTTVEVQPRNILELDLNLPAPEEDLREPKFQFATAATKKSMVLSAAPALVDCHY* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0239 346 PANTHER ZINC FINGER PROTEIN ZAT5 21 346 - -
Amo13g0239 346 Pfam C2H2-type zinc finger 135 160 - -
Amo13g0239 346 Pfam C2H2-type zinc finger 242 266 - -
Amo13g0239 346 Gene3D Classic Zinc Finger 225 297 - -
Amo13g0239 346 SUPERFAMILY beta-beta-alpha zinc fingers 134 264 IPR036236 -
Amo13g0239 346 ProSitePatterns Zinc finger C2H2 type domain signature. 244 264 IPR013087 -
Amo13g0239 346 MobiDBLite consensus disorder prediction 86 106 - -
Amo13g0239 346 SMART c2h2final6 242 264 IPR013087 -
Amo13g0239 346 SMART c2h2final6 135 157 IPR013087 -
Amo13g0239 346 MobiDBLite consensus disorder prediction 151 192 - -
Amo13g0239 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 242 269 IPR013087 -
Amo13g0239 346 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 21 346 - -
Amo13g0239 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 162 IPR013087 -
Amo13g0239 346 ProSitePatterns Zinc finger C2H2 type domain signature. 137 157 IPR013087 -
Amo13g0239 346 MobiDBLite consensus disorder prediction 169 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0239 Amo-Chr13 3454481 3456085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0239 27 346 C2H2 Transcription Factor Family AT2G28200 39.039 1.65e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g0239 zf-C2H2_6 2.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0239 - - aip:107629278 617.846