Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0237 ATGTACACATCTAATGGAGTCTCACTCCATGAGCTGTCCATCAATTATTTAAAAGAACGGAAGTTTTCCTCCAGTGATAATGATGACCTCTGCAGTATATGTTCTGATGGAGGGGATCTTTTGTGTTGCGATGGATGCCCGAGAGCATTTCACATTGGTGAAGTGCTTGTGATAGGTGCTACAAATAGATTAGACATTCTTGATCCCGCTTTGTTGAGGAAGGGTCGTTTTGACAAGATCATTCGAGTTGGTTTGCCATCAAAGGATGGAAGATTTGCCATTTTGAAGGTGATTTCCTCCTCCGACAATTTATGCATAATGAACCTTGCTTCGAGAAGTATTTCATTGTCTTTATCCATCTTTTTTCGTCGAAAAGGAACTTTTGAAACAGGGCAAGAGGATAGTGCTGAAATTCCTGAAAAATTGAAGCTTAGACTGGCATACAGAGAAGTGGCAGTTGCTGTTCTTTGGATAGGTTCTCACTGA 486 0.4074 MYTSNGVSLHELSINYLKERKFSSSDNDDLCSICSDGGDLLCCDGCPRAFHIGEVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRFAILKVISSSDNLCIMNLASRSISLSLSIFFRRKGTFETGQEDSAEIPEKLKLRLAYREVAVAVLWIGSH* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0237 161 SUPERFAMILY FYVE/PHD zinc finger 15 52 IPR011011 -
Amo13g0237 161 Gene3D - 43 85 IPR027417 -
Amo13g0237 161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 105 IPR027417 -
Amo13g0237 161 PANTHER METALLOPROTEASE M41 FTSH 123 156 - -
Amo13g0237 161 PANTHER METALLOPROTEASE M41 FTSH 54 103 - -
Amo13g0237 161 ProSitePatterns AAA-protein family signature. 55 73 IPR003960 GO:0005524|GO:0016887
Amo13g0237 161 Pfam ATPase family associated with various cellular activities (AAA) 54 84 IPR003959 GO:0005524|GO:0016887
Amo13g0237 161 Gene3D - 86 103 - -
Amo13g0237 161 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 123 156 - -
Amo13g0237 161 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 54 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0237 Amo-Chr13 3397184 3399908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0237 1 52 PHD Transcription Factor Family AT2G36720 65.385 3.30e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0237 - - ahf:112783256 124.02