Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0234 ATGACCAAACCACCCTCCGCCTTCGACGCTCTCATGTCCGGTGCTCGCGCCGCCGCCGCCGCCGCTGCCAAGAAGAAGAAAMCCGAGCAGTCGCAGCAACCAACTGTTTCTTCTCCCAAGAAACGAAAACCTTCARCCTCCACTCTCCCCACTCCAACCTCCACGCTAAACCCTAACGACCCCAAACCCTCCGAAACCGTTCCTACGCCAACGAGTGACCCGCCCAAGCAAGAACCGGAGAAAGAAGGCCCTCCTCCGACCAAGACTCGCCACGTGTCTTCTTCATCTGCCTTGCAGGAGCTGAAGAAGCGCATTCCGCAGCTGAAGGCGAAGCCTTCGAAATTCGATCCTAGCTCAGTGGCTTGTTGGGAGAAGGGCACGCCTGTGCCGTTCTCGTTYCTGGCMTTGGCGCTTGAKATGATTTCTYRGGAYCCTGGCAGAATCAAGATGACAGATATTGRGTGCAATTTGATGAAGACTGTGATATACTCTACCCCTGAGGATCTTGTGCCTCTGATTTATCTCTTCGCGAAGAGGGTTGCTCCGGCGCATGAAGGGCTGGAATTGGGAATTGGCGAGACTTCGATTATTAAGGCACTTGCTGAGGCAACTGGAAGTACTGAATCCAAAATCAAGACGCAGTATCAGGTGACTCTTTTGGGTTTTGTATGGGTGATTTGGGAAAAGTTGCCAAGGAGTGCCGTTCATCTCAGTCCATGA 720 0.525 MTKPPSAFDALMSGARAAAAAAAKKKKXEQSQQPTVSSPKKRKPSXSTLPTPTSTLNPNDPKPSETVPTPTSDPPKQEPEKEGPPPTKTRHVSSSSALQELKKRIPQLKAKPSKFDPSSVACWEKGTPVPFSFLALALXMISXDPGRIKMTDIXCNLMKTVIYSTPEDLVPLIYLFAKRVAPAHEGLELGIGETSIIKALAEATGSTESKIKTQYQVTLLGFVWVIWEKLPRSAVHLSP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0234 239 Pfam DNA ligase N terminus 130 215 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo13g0234 239 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 112 216 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo13g0234 239 MobiDBLite consensus disorder prediction 1 105 - -
Amo13g0234 239 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 25 216 - -
Amo13g0234 239 MobiDBLite consensus disorder prediction 28 62 - -
Amo13g0234 239 Gene3D - 106 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo13g0234 239 PANTHER DNA LIGASE 1 25 216 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0234 5 223 Core DNA Replication Machinery Family AT1G08130 45.852 1.81e-50 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0234 K10747 - adu:107484497 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0234 13 3370454 3371394 Amo13g0234 13 3370454 3371394 ECH