Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0227 ATGGGAAGAGCTCCATGTTGTGACAAGGCAAATGTGAAGAGAGGACCATGGTCACCTGAAGAAGACTTAAAGCTCAAAGAATACATACACAAGCATGGCACTGGTGGCAATTGGATTGCTCTTCCTCAAAAAGCTGGTCTCAAGAGATGTGGGAAGAGTTGCAGGCTGAGATGGCTTAACTATCTGAGGCCAAACATTAAGCATGGAGAATTTTCTGAAGAGGAAGACAGAATCATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGAAGGACTGACAATGATATAAAGAATTATTGGAACACTAAGCTCAAGAAAAAACTCATCTCTGGTTTCCTTCCCAATTCTTCTTCTATTCATCAAAGAAAACATCATCAACAACAACAACCTCCATTTCCATCATCATCAATGTACATGGATCAATATTATGGATCTTATGTCACAGGCCTTGTTGATCCTATTTCACTTCCTTCAACTGAATACTATGCAAACACAACAACAACAACCTCAGTTCCATTTTACCAGCACCAAGTAGATTCCATTGTTAGCCCCAGCAGCATGCAACAAAATTATCACATGTTTGGAAGTGAAGGTAGTTGCAGTTCCTCTGATAATGGAAGCAGTATCAAGCAAGAGGAAATTGGGTATCATCATCAAGGATCATACAACAACATTATTGCATTTGATGACTTCAACAACAACAATAAGTTTCTTGTTATGCCTAGTAGTTTCAATGATAATAATAATAATAGCATTGTTAATTATGATGGTGGTGAAAATATTACTGAATATGATCTTGAGGAAATTAAGCAATTGATTAGTGTTAGTAGTAGTGTTGATGAAATCAAGGAGGAGAAACAACCTATTTACTATTATTATTGA 909 0.3729 MGRAPCCDKANVKRGPWSPEEDLKLKEYIHKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSEEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLISGFLPNSSSIHQRKHHQQQQPPFPSSSMYMDQYYGSYVTGLVDPISLPSTEYYANTTTTTSVPFYQHQVDSIVSPSSMQQNYHMFGSEGSCSSSDNGSSIKQEEIGYHHQGSYNNIIAFDDFNNNNKFLVMPSSFNDNNNNSIVNYDGGENITEYDLEEIKQLISVSSSVDEIKEEKQPIYYYY* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0227 302 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Amo13g0227 302 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Amo13g0227 302 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Amo13g0227 302 PANTHER OS09G0431300 PROTEIN 1 289 - -
Amo13g0227 302 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Amo13g0227 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Amo13g0227 302 SMART sant 67 115 IPR001005 -
Amo13g0227 302 SMART sant 13 64 IPR001005 -
Amo13g0227 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Amo13g0227 302 Gene3D - 7 68 - -
Amo13g0227 302 CDD SANT 16 62 IPR001005 -
Amo13g0227 302 Gene3D - 69 140 - -
Amo13g0227 302 PANTHER TRANSCRIPTION FACTOR RAX3 1 289 - -
Amo13g0227 302 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0227 Amo-Chr13 3232549 3233907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0227 1 118 MYB Transcription Factor Family AT5G57620 90.678 1.21e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g0227 Myb_DNA-binding 9.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0227 K09422 - gmx:100779919 319.316