Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0219 ATGGAAACCAAGGCTGAAGTTGTTTCTTCTTCTGCTGAATCCAGCTCCAAACACGTTTCTCCAATGGAACTTGGAATTGAGAATTTTGGGTGCAAACATTACAGAAGGAGATGCAAGATCAGAGCACCATGTTGTGATGAGGTTTTTGATTGTAGGCATTGCCACAACGATGCTAAGAACTCTGAGGAGATTAATGTTAAGGATCGTCATGATATCCCACGCCATGAAATTAACAAGGTCATTTGTTCTGTGTGTGATACAGAACAAGATGTTCAACAGAACTGCATAAACTGTGGGGTATGCATGGGCAAGTATTTTTGTGGTACTTGCAAATTCTTTGATGATGATGTTTCAAAGAACCAGTACCACTGTGATGATTGTGGCATCTGCAGAACTGGAGGAAAGGATAACTTTTTCCATTGCAAGAAATGTGGGTGCTGCTACTCTAAAATAATGGAAGCTGGTCATCGCTGTGTGGAAAGAGCAATGCATCACAATTGTCCTGTTTGCTTTGAGTATCTGTTTGAGACATTAAGGGATATTACTGTGTTGCCTTGTGGGCATACCATACATTTGGAGTGTGTCAAAGAGATGGAAAGACATCATAGGTACTCTTGTCCGGTTTGCTCCAAATCCATTTGTGACATGTCAAGTTTATGGAAGAAGCTTGATCAAGTGATTGCCTCAACTCCAATGCCAGAAACCTACAAAAACAAGATGGTGTGGATTCTGTGTAATGATTGTGGAGTGAATTCTCAAGTGCAATTCCATGTTGTGGCACATAAATGCTTAAGTTGCAACTCTTACAATACAAGGCAGATACAGGGGAGCCCTGCTACCTCATGTTCTTCAAGAGTCACTGAGATGGTTAGGTGA 876 0.4121 METKAEVVSSSAESSSKHVSPMELGIENFGCKHYRRRCKIRAPCCDEVFDCRHCHNDAKNSEEINVKDRHDIPRHEINKVICSVCDTEQDVQQNCINCGVCMGKYFCGTCKFFDDDVSKNQYHCDDCGICRTGGKDNFFHCKKCGCCYSKIMEAGHRCVERAMHHNCPVCFEYLFETLRDITVLPCGHTIHLECVKEMERHHRYSCPVCSKSICDMSSLWKKLDQVIASTPMPETYKNKMVWILCNDCGVNSQVQFHVVAHKCLSCNSYNTRQIQGSPATSCSSRVTEMVR* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0219 291 Pfam CHY zinc finger 31 112 IPR008913 GO:0008270
Amo13g0219 291 ProSiteProfiles Zinc finger RING-type profile. 167 210 IPR001841 -
Amo13g0219 291 ProSiteProfiles Zinc finger CHY-type profile. 24 100 IPR008913 GO:0008270
Amo13g0219 291 ProSiteProfiles Zinc finger CTCHY-type profile. 102 166 IPR017921 -
Amo13g0219 291 Pfam Zinc-ribbon 214 272 IPR039512 -
Amo13g0219 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 11 289 - -
Amo13g0219 291 Pfam RING-type zinc-finger 167 207 IPR027370 -
Amo13g0219 291 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 11 289 - -
Amo13g0219 291 SUPERFAMILY CHY zinc finger-like 28 102 IPR037274 GO:0008270
Amo13g0219 291 SUPERFAMILY Zinc hairpin stack 103 160 IPR037275 -
Amo13g0219 291 SMART ring_2 167 209 IPR001841 -
Amo13g0219 291 Gene3D - 240 280 - -
Amo13g0219 291 SUPERFAMILY RING/U-box 165 215 - -
Amo13g0219 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 239 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0219 Amo-Chr13 3169822 3172269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0219 29 275 C2H2 Transcription Factor Family AT3G18290 40.316 4.33e-56 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0219 K10144 - gmx:100812709 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0219 13 3169822 3172269 Amo13g0219 13 3169822 3172269 ECH